Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0401.Seq
(408 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 45 5e-06
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 26 2.0
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo... 26 2.0
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 3.4
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc... 25 4.5
SPAC23H4.11c |cnl2||centromere localized protein Cnl2|Schizosacc... 25 6.0
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo... 25 6.0
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 24 7.9
SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c... 24 7.9
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 24 7.9
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 24 7.9
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 24 7.9
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 24 7.9
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 44.8 bits (101), Expect = 5e-06
Identities = 23/70 (32%), Positives = 36/70 (51%)
Frame = +1
Query: 25 LHAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIV 204
L +E ++ LP V+RRI LR LQK + D+E++F E+ R+ +V
Sbjct: 63 LTSEGVSELPEAVQRRISGLRGLQKRYSDLESQFQKELFELEKAYAKKYAPIFKRRSEVV 122
Query: 205 NGTYEPNDDE 234
G EP ++E
Sbjct: 123 RGADEPTEEE 132
Score = 27.5 bits (58), Expect = 0.85
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 264 EEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYNIFRNV 404
EEE+ + + A E +E ++ + + KGIP+FW +NV
Sbjct: 130 EEEIKKG-EAADENEKKEPTSSESKKQEGGDDTKGIPEFWLTAMKNV 175
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 26.2 bits (55), Expect = 2.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 288 QNAAITEGEEKKDDKAIEPPMDPNVKGIP 374
+N+ + E EEK D +AIE + +V G P
Sbjct: 554 KNSLVNEAEEKNDLEAIEAAKNFHVNGKP 582
>SPBC2D10.11c |||nucleosome assembly protein Nap2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 26.2 bits (55), Expect = 2.0
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 354 PNVKGIPDFWYNIFRNV 404
P+ KGIP+FW NV
Sbjct: 161 PDPKGIPEFWLTCLHNV 177
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.4 bits (53), Expect = 3.4
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +3
Query: 264 EEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGI 371
EEEL+ ++ N + E++KD+ +P P++ +
Sbjct: 475 EEELSDSLSNDFGIDAEKEKDENLSKPEHHPSITSV 510
>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 25.0 bits (52), Expect = 4.5
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +1
Query: 205 NGTYEPNDDECLNPWRETLKKKS*LGRYKMLPSLRVRKRRMTRLLSLQ 348
NGT EP + ++ +ETL+ + + ++K + + + LSLQ
Sbjct: 227 NGTTEPFEKNSVHSGKETLQYSATISKWKAMIEQIIFQNDQAASLSLQ 274
>SPAC23H4.11c |cnl2||centromere localized protein
Cnl2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 24.6 bits (51), Expect = 6.0
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +3
Query: 237 SQPMA*DTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYNIFRNV 404
++P+ E L+ AVQ+A EEK+ + M+ + + DF ++ NV
Sbjct: 107 AKPLDISEINERLSEAVQSAYTKLNEEKERCTQLTLKMNSQIASLSDFQWSKEPNV 162
>SPAC7D4.06c |alg3||dolichol-P-Man dependent
alpha|Schizosaccharomyces pombe|chr 1|||Manual
Length = 406
Score = 24.6 bits (51), Expect = 6.0
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = -1
Query: 276 LTLLLQCLTPWVETFIIIRFICAIHNKSSLFI 181
L +L C WV I++ C++ S L++
Sbjct: 163 LFILSSCKKKWVRASILLSVACSVKMSSLLYV 194
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 24.2 bits (50), Expect = 7.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 308 LSDGSILYRPS*LFFFSVSRHGLR 237
L+D SI+Y + F S+SR G+R
Sbjct: 333 LNDVSIIYERASCIFASISRPGIR 356
>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 341
Score = 24.2 bits (50), Expect = 7.9
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -1
Query: 234 FIIIRFICAIHNKSSLFIKRLVKFFIFAFECMYFTVKLG--LNVDKLLL 94
F II F + SSL + F I + +FT+ LG +NV++ L
Sbjct: 109 FCIIWFAANYFSNSSLGFTNVASFTIISSMSGFFTLGLGTIVNVERFTL 157
>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
Ran1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 470
Score = 24.2 bits (50), Expect = 7.9
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = -1
Query: 372 GYPLHWDPLEAQ*PCHPSFPHPQ*---WQHFVPPELTLLLQCLTP 247
GYP H + Q P P PQ W H P + + LQ LTP
Sbjct: 335 GYP-HQGYMPTQNIGFPWPPTPQFVSNWNHCATPTIPVSLQVLTP 378
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 24.2 bits (50), Expect = 7.9
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 9 GHH*SPSCRSDGVPTPECSSANPRLENSSEGVCRH*GQVL 128
GHH +P CR+ + S N R E + V RH G V+
Sbjct: 485 GHHKNPKCRAKKLVV---ESRNGRREYVQDAVRRH-GDVI 520
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 24.2 bits (50), Expect = 7.9
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 95 RRSLSTLRPSFTVKYMHSNANMKNFTSLF 181
RRS + L PS T + N + NF S F
Sbjct: 612 RRSFTLLFPSKTTWVLFLNLTLLNFASFF 640
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 24.2 bits (50), Expect = 7.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 285 VQNAAITEGEEKKDDKAIEPPMDPNV 362
V+NAAI E+++ +AIE + P V
Sbjct: 2435 VRNAAIEVRRERREKRAIEQVVAPEV 2460
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,665,008
Number of Sequences: 5004
Number of extensions: 31284
Number of successful extensions: 117
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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