Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0401.Seq
(408 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031... 45 3e-05
06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255... 42 2e-04
01_06_0465 - 29573972-29574110,29574300-29574343,29574434-295746... 36 0.012
06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071... 36 0.016
02_05_1074 - 33904518-33904697,33904886-33904985,33905085-339053... 31 0.35
05_05_0163 + 22842955-22844371,22845519-22845592,22845913-22845948 29 1.1
07_03_0546 - 19325526-19326054,19327109-19327631,19327898-193281... 27 5.7
05_07_0064 + 27440520-27440942,27442387-27442998,27443109-274431... 27 7.6
02_01_0734 - 5479188-5479335,5479518-5479582,5479934-5480041,548... 27 7.6
>05_06_0234 -
26602660-26602728,26602814-26602988,26603077-26603120,
26603204-26603381,26603468-26603652,26603737-26603801,
26603985-26604066,26604342-26604434,26605096-26605191,
26605312-26605355,26605467-26605530
Length = 364
Score = 44.8 bits (101), Expect = 3e-05
Identities = 23/64 (35%), Positives = 31/64 (48%)
Frame = +1
Query: 28 HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVN 207
H + + SL P VR+R+ LR +Q + D+EAKF+ E A R IVN
Sbjct: 46 HTDVLESLEPKVRKRVEVLREIQSQHDDLEAKFFEERAALEAKYQKMYEPLYSKRYEIVN 105
Query: 208 GTYE 219
G E
Sbjct: 106 GVVE 109
>06_01_0356 +
2557127-2557193,2557272-2557315,2557433-2557528,
2559259-2559351,2559450-2559540,2559617-2559678,
2559754-2559938,2560022-2560199,2560293-2560336,
2560440-2560635,2560728-2560745,2560955-2561005
Length = 374
Score = 41.5 bits (93), Expect = 2e-04
Identities = 22/64 (34%), Positives = 31/64 (48%)
Frame = +1
Query: 28 HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVN 207
H + + +L PNVR+R+ LR +Q + +IE KF+ E A R IVN
Sbjct: 47 HTDVLEALSPNVRKRVEYLREIQGQHDEIELKFFEERAALEAKYQKLYEPLYTKRYNIVN 106
Query: 208 GTYE 219
G E
Sbjct: 107 GVVE 110
>01_06_0465 -
29573972-29574110,29574300-29574343,29574434-29574602,
29574707-29574894,29575081-29575145,29575257-29575311,
29575502-29575594,29576035-29576130,29576259-29576302,
29576419-29576431
Length = 301
Score = 35.9 bits (79), Expect = 0.012
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +1
Query: 28 HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVN 207
H + + SL P VR+R+ L +Q + ++EAKF E A R+ IV+
Sbjct: 29 HVDVLESLAPVVRKRVDVLIEIQSQHDELEAKFLEEKAALEANYQKLYGPLYSKRSEIVS 88
Query: 208 GTYE 219
G E
Sbjct: 89 GVLE 92
>06_03_0740 -
24006485-24006629,24006821-24006864,24006954-24007122,
24007226-24007413,24007572-24007634,24007992-24008084,
24009837-24009932,24010024-24010067,24010184-24010357,
24010764-24010974
Length = 408
Score = 35.5 bits (78), Expect = 0.016
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +1
Query: 28 HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSE 135
H + + SL P+VR+R+ L +Q + ++E KF+ E
Sbjct: 153 HVDVLESLAPSVRKRVDVLMEIQSQHDELEVKFFEE 188
Score = 27.9 bits (59), Expect = 3.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 345 PMDPNVKGIPDFWYNIFRN 401
P+ KG+PDFW N +N
Sbjct: 202 PLYSKEKGVPDFWLNAMKN 220
>02_05_1074 - 33904518-33904697,33904886-33904985,33905085-33905311,
33905511-33908384,33908467-33908643,33908786-33909008,
33909727-33909806,33910657-33910817,33910892-33910937,
33911129-33911251,33911730-33911804,33911920-33912120
Length = 1488
Score = 31.1 bits (67), Expect = 0.35
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = -1
Query: 318 FPHPQ*WQHFVPPEL---TLLLQCLTPWVETFIIIRFICAIHNKSSLFIK 178
FPH + + H PP L T LL C+ P V ++ + + +H+ + +K
Sbjct: 865 FPHLKHFLHREPPSLSSETALLSCIKPPVSKLVLYQALEDVHDAGDILLK 914
>05_05_0163 + 22842955-22844371,22845519-22845592,22845913-22845948
Length = 508
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = -1
Query: 270 LLLQC-LTPWVETFIIIRFICAIHNKSSLFIKRLVKFFIFAFECMYFTVKLGLNVD 106
+LL C L PW+++F I + +H+K +L K +K A + + +K G+ +D
Sbjct: 454 VLLPCVLPPWLDSFPIPNAVLCLHSKINLSGKNNMKNETLA-DILVINIKTGILMD 508
>07_03_0546 -
19325526-19326054,19327109-19327631,19327898-19328152,
19328283-19328472,19328473-19328525,19329295-19329555,
19329670-19329720,19329873-19330121,19330225-19330453,
19332245-19332559
Length = 884
Score = 27.1 bits (57), Expect = 5.7
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -2
Query: 368 TLYIGIHWRLNSLVILLFLTLSDG 297
T+ + + W++N +V+L FLTLS G
Sbjct: 550 TIIMLLIWQINIIVVLCFLTLSLG 573
>05_07_0064 +
27440520-27440942,27442387-27442998,27443109-27443175,
27443271-27443362,27443493-27443708,27443869-27444006,
27444325-27444474
Length = 565
Score = 26.6 bits (56), Expect = 7.6
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 261 EEEELARAVQNAAITEGEEKKD-DKAIEPPMDP 356
EEEE + +AA +E E ++D + A+ PM P
Sbjct: 62 EEEEEESVMASAAASEAERERDVEAAVPVPMSP 94
>02_01_0734 -
5479188-5479335,5479518-5479582,5479934-5480041,
5480552-5480656
Length = 141
Score = 26.6 bits (56), Expect = 7.6
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 1 MIAAITNRLHAEAMASLPPNVRR-RIRALRTLQKEFVD 111
M AA+ RLHA + PP + + +RA + ++ EF D
Sbjct: 5 MGAAVVRRLHAAQAQAQPPRLTKLALRAPKFVEVEFED 42
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,067,891
Number of Sequences: 37544
Number of extensions: 212392
Number of successful extensions: 623
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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