Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0401.Seq
         (408 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.029
SB_13208| Best HMM Match : ThiS (HMM E-Value=1.6)                      29   1.9  
SB_10763| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_33307| Best HMM Match : NAF1 (HMM E-Value=1.5e-18)                  27   7.8  
SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3)                27   7.8  

>SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 34.7 bits (76), Expect = 0.029
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = +1

Query: 100 EFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNP 246
           E   +E KFY EVHA               R  I +G  EP D+EC  P
Sbjct: 141 ECCKLEGKFYEEVHALECKYAEKFKPFYEKRRNIASGGVEPTDEECRWP 189



 Score = 31.9 bits (69), Expect = 0.21
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
 Frame = +3

Query: 255 DTEEEELARAVQNAAIT-EGEEK---KDDKAIEPPMDP-NVKGIPDFWYNIFRNV 404
           + EE+E   A + + ++ E EEK    D++ IE    P + KGIP+FW    +NV
Sbjct: 197 EAEEKEEKEATEVSKLSGEVEEKVKIDDEEKIETEQLPEDTKGIPEFWLTAMKNV 251


>SB_13208| Best HMM Match : ThiS (HMM E-Value=1.6)
          Length = 1119

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = +3

Query: 300 ITEGEEKKDDKA-IEPPMDPNV--KGIPDFWYNIFRN 401
           +TE +E+K+DKA IE    P +    +  ++YN FRN
Sbjct: 371 VTENKEEKEDKAKIEDSQTPEIFSHSLDLYFYNEFRN 407


>SB_10763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 261 EEEELARAVQNAAITEGEEKKDDKAIE 341
           E+EE+ RAV+ +   E E++K +KA E
Sbjct: 52  EQEEMERAVKESIRVEKEKRKAEKAAE 78


>SB_33307| Best HMM Match : NAF1 (HMM E-Value=1.5e-18)
          Length = 1085

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 255 DTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVK 365
           +TEE E  + ++ A +T+ E    D  +EP +D  +K
Sbjct: 478 ETEENEDEKTLKGAPVTKDELTLKDLPLEPDVDIQLK 514


>SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3)
          Length = 477

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 237 TFIIIRFICAIHNKSSLFIKRLVKFFIFAFECMYF 133
           +F +  FI   +     F K +   F++ F CMYF
Sbjct: 22  SFHVFMFIVVPYVTKRPFFKNIPAIFMYIFMCMYF 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,602,146
Number of Sequences: 59808
Number of extensions: 245046
Number of successful extensions: 764
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)