BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0401.Seq (408 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.029 SB_13208| Best HMM Match : ThiS (HMM E-Value=1.6) 29 1.9 SB_10763| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5 SB_33307| Best HMM Match : NAF1 (HMM E-Value=1.5e-18) 27 7.8 SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3) 27 7.8 >SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 340 Score = 34.7 bits (76), Expect = 0.029 Identities = 18/49 (36%), Positives = 21/49 (42%) Frame = +1 Query: 100 EFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNP 246 E +E KFY EVHA R I +G EP D+EC P Sbjct: 141 ECCKLEGKFYEEVHALECKYAEKFKPFYEKRRNIASGGVEPTDEECRWP 189 Score = 31.9 bits (69), Expect = 0.21 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 5/55 (9%) Frame = +3 Query: 255 DTEEEELARAVQNAAIT-EGEEK---KDDKAIEPPMDP-NVKGIPDFWYNIFRNV 404 + EE+E A + + ++ E EEK D++ IE P + KGIP+FW +NV Sbjct: 197 EAEEKEEKEATEVSKLSGEVEEKVKIDDEEKIETEQLPEDTKGIPEFWLTAMKNV 251 >SB_13208| Best HMM Match : ThiS (HMM E-Value=1.6) Length = 1119 Score = 28.7 bits (61), Expect = 1.9 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%) Frame = +3 Query: 300 ITEGEEKKDDKA-IEPPMDPNV--KGIPDFWYNIFRN 401 +TE +E+K+DKA IE P + + ++YN FRN Sbjct: 371 VTENKEEKEDKAKIEDSQTPEIFSHSLDLYFYNEFRN 407 >SB_10763| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 260 Score = 27.5 bits (58), Expect = 4.5 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = +3 Query: 261 EEEELARAVQNAAITEGEEKKDDKAIE 341 E+EE+ RAV+ + E E++K +KA E Sbjct: 52 EQEEMERAVKESIRVEKEKRKAEKAAE 78 >SB_33307| Best HMM Match : NAF1 (HMM E-Value=1.5e-18) Length = 1085 Score = 26.6 bits (56), Expect = 7.8 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = +3 Query: 255 DTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVK 365 +TEE E + ++ A +T+ E D +EP +D +K Sbjct: 478 ETEENEDEKTLKGAPVTKDELTLKDLPLEPDVDIQLK 514 >SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3) Length = 477 Score = 26.6 bits (56), Expect = 7.8 Identities = 11/35 (31%), Positives = 17/35 (48%) Frame = -1 Query: 237 TFIIIRFICAIHNKSSLFIKRLVKFFIFAFECMYF 133 +F + FI + F K + F++ F CMYF Sbjct: 22 SFHVFMFIVVPYVTKRPFFKNIPAIFMYIFMCMYF 56 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,602,146 Number of Sequences: 59808 Number of extensions: 245046 Number of successful extensions: 764 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 716 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 764 length of database: 16,821,457 effective HSP length: 75 effective length of database: 12,335,857 effective search space used: 740151420 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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