Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0401.Seq
         (408 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058402-1|AAL13631.1|  375|Drosophila melanogaster GH17085p pro...    29   1.8  
AL109630-5|CAB65874.1|  375|Drosophila melanogaster EG:BACR7A4.1...    29   1.8  
AE014298-125|AAF45565.2|  375|Drosophila melanogaster CG3708-PA ...    29   1.8  
AE014134-3171|AAS64724.1|  646|Drosophila melanogaster CG10481-P...    29   2.4  
AE014134-887|AAZ66448.1| 9606|Drosophila melanogaster CG33715-PE...    28   4.1  
U39553-1|AAB07898.1|  370|Drosophila melanogaster nucleosome ass...    28   5.4  
BT001479-1|AAN71234.1|  370|Drosophila melanogaster LD21576p pro...    28   5.4  
AE013599-3725|AAF47097.1|  370|Drosophila melanogaster CG5330-PA...    28   5.4  
X07985-1|CAA30794.1| 2175|Drosophila melanogaster cut protein pr...    27   7.2  
AE014298-1048|AAF46264.2| 2175|Drosophila melanogaster CG11387-P...    27   7.2  
AE014298-764|AAF46054.1|  623|Drosophila melanogaster CG15776-PA...    27   7.2  
AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-P...    27   7.2  

>AY058402-1|AAL13631.1|  375|Drosophila melanogaster GH17085p
           protein.
          Length = 375

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 345 PMDPNVKGIPDFWYNIFRNV 404
           P+ P   G+P FW  +F+NV
Sbjct: 170 PVSPTTLGVPRFWLTVFQNV 189



 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = +1

Query: 40  MASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYE 219
           +  L   V+ RIRALR  Q + V I  +F+ EV+                R  I+ G+ E
Sbjct: 75  IGQLAEPVQNRIRALRHNQLQQVRISEQFFREVYELERRFYGQSCALFDARRDILEGSVE 134

Query: 220 P 222
           P
Sbjct: 135 P 135


>AL109630-5|CAB65874.1|  375|Drosophila melanogaster EG:BACR7A4.18
           protein.
          Length = 375

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 345 PMDPNVKGIPDFWYNIFRNV 404
           P+ P   G+P FW  +F+NV
Sbjct: 170 PVSPTTLGVPRFWLTVFQNV 189



 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = +1

Query: 40  MASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYE 219
           +  L   V+ RIRALR  Q + V I  +F+ EV+                R  I+ G+ E
Sbjct: 75  IGQLAEPVQNRIRALRHNQLQQVRISEQFFREVYELERRFYGQSCALFDARRDILEGSVE 134

Query: 220 P 222
           P
Sbjct: 135 P 135


>AE014298-125|AAF45565.2|  375|Drosophila melanogaster CG3708-PA
           protein.
          Length = 375

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 345 PMDPNVKGIPDFWYNIFRNV 404
           P+ P   G+P FW  +F+NV
Sbjct: 170 PVSPTTLGVPRFWLTVFQNV 189



 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = +1

Query: 40  MASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYE 219
           +  L   V+ RIRALR  Q + V I  +F+ EV+                R  I+ G+ E
Sbjct: 75  IGQLAEPVQNRIRALRHNQLQQVRISEQFFREVYELERRFYGQSCALFDARRDILEGSVE 134

Query: 220 P 222
           P
Sbjct: 135 P 135


>AE014134-3171|AAS64724.1|  646|Drosophila melanogaster CG10481-PB,
           isoform B protein.
          Length = 646

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/57 (22%), Positives = 29/57 (50%)
 Frame = -1

Query: 291 FVPPELTLLLQCLTPWVETFIIIRFICAIHNKSSLFIKRLVKFFIFAFECMYFTVKL 121
           F P     +++CL  W      +R      +KS+ ++   +K+F+F  E ++ T+++
Sbjct: 427 FEPDYAVAVIRCLPAWFRFAQSLRRFRDSGSKSTDYLINALKYFLFIAEVVFSTIQM 483


>AE014134-887|AAZ66448.1| 9606|Drosophila melanogaster CG33715-PE,
            isoform E protein.
          Length = 9606

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +3

Query: 258  TEEEELARAVQNAAITEGEEKKDDKAIEP 344
            TE+ ELA++V  AA ++ ++KK+   +EP
Sbjct: 1355 TEDAELAKSVTPAAPSKKDKKKNKTVVEP 1383


>U39553-1|AAB07898.1|  370|Drosophila melanogaster nucleosome
           assembly protein NAP-1 protein.
          Length = 370

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 357 NVKGIPDFWYNIFRNVS 407
           + KGIP FW  +FRN +
Sbjct: 142 DAKGIPGFWLTVFRNTA 158


>BT001479-1|AAN71234.1|  370|Drosophila melanogaster LD21576p
           protein.
          Length = 370

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 357 NVKGIPDFWYNIFRNVS 407
           + KGIP FW  +FRN +
Sbjct: 142 DAKGIPGFWLTVFRNTA 158


>AE013599-3725|AAF47097.1|  370|Drosophila melanogaster CG5330-PA
           protein.
          Length = 370

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 357 NVKGIPDFWYNIFRNVS 407
           + KGIP FW  +FRN +
Sbjct: 142 DAKGIPGFWLTVFRNTA 158


>X07985-1|CAA30794.1| 2175|Drosophila melanogaster cut protein
           protein.
          Length = 2175

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 255 DTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNV 362
           D E+E+  R   NA  T+  E K  K    P+D NV
Sbjct: 575 DDEDEDEDREAVNATTTDSNELKIKKEQHSPLDLNV 610


>AE014298-1048|AAF46264.2| 2175|Drosophila melanogaster CG11387-PA,
           isoform A protein.
          Length = 2175

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 255 DTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNV 362
           D E+E+  R   NA  T+  E K  K    P+D NV
Sbjct: 575 DDEDEDEDREAVNATTTDSNELKIKKEQHSPLDLNV 610


>AE014298-764|AAF46054.1|  623|Drosophila melanogaster CG15776-PA
           protein.
          Length = 623

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 237 SQPMA*DTEEEELARAVQNAAITEGEEKKDDKAIEPPMDP 356
           S P   + EEE+   + ++    E EE+ DDK+  PP  P
Sbjct: 186 SNPDEEEEEEEQEQASQEDTPKEEDEEEDDDKSTPPPPLP 225


>AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-PB
             protein.
          Length = 23015

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 393   ICCTKSLGYPLHWDPLEAQ*PCHPSFPHP 307
             I C ++   P+  +P+EA+ PC+PS   P
Sbjct: 19708 ISCQRTPIAPVQREPIEAKDPCYPSICGP 19736


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,112,177
Number of Sequences: 53049
Number of extensions: 351711
Number of successful extensions: 1260
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1188481122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)