Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0401.Seq
         (408 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   5.4  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   5.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    20   9.4  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           20   9.4  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    20   9.4  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    20   9.4  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 86  ELFRRSLSTLRPSFTVKY 139
           E FRR +ST+   F V+Y
Sbjct: 451 EKFRRWVSTMSRPFEVRY 468


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 260 SVSRHGLRHSSSLGSYVPFTIRA 192
           ++SR+G+R SS+     PF  R+
Sbjct: 255 TISRNGVRLSSARAFITPFENRS 277


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 28  HAEAMASLPP 57
           HA++ ASLPP
Sbjct: 291 HAKSQASLPP 300


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 305 SDGSILYRPS*LFFFSVSRHGLRHSSSLGSYVP 207
           S GS++ R   +FF  V+R  +    +   Y+P
Sbjct: 436 SSGSVIDRNGVMFFNMVTRDSVWCWDTRKEYIP 468


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -1

Query: 255 LTPWVETFIIIRFICAIHN 199
           +TP ++  + I   C +HN
Sbjct: 315 ITPLIQKHLKIHDTCGVHN 333


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 95  RRSLSTLRPSFTVKYMHSNANMKNF 169
           R   S +  S + K +H+N N KN+
Sbjct: 308 RSKESKIISSLSNKTIHNNNNYKNY 332


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,838
Number of Sequences: 438
Number of extensions: 2074
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)