Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0401.Seq
         (408 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), puta...    42   2e-04
At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta...    41   4e-04
At4g03620.1 68417.m00497 myosin heavy chain-related contains wea...    29   0.91 
At2g27810.2 68415.m03372 xanthine/uracil permease family protein...    28   2.1  
At2g27810.1 68415.m03371 xanthine/uracil permease family protein...    28   2.1  
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he...    28   2.8  
At2g37840.2 68415.m04646 protein kinase family protein contains ...    27   4.8  
At2g37840.1 68415.m04645 protein kinase family protein contains ...    27   4.8  
At4g30310.3 68417.m04309 ribitol kinase, putative similar to rib...    26   8.5  
At4g30310.2 68417.m04308 ribitol kinase, putative similar to rib...    26   8.5  
At3g48360.1 68416.m05278 speckle-type POZ  protein-related conta...    26   8.5  
At1g71440.1 68414.m08253 tubulin folding cofactor E / Pfifferlin...    26   8.5  

>At2g19480.1 68415.m02277 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 379

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 21/64 (32%), Positives = 33/64 (51%)
 Frame = +1

Query: 28  HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVN 207
           H++ + +L P VR+R+  LR +Q ++ ++EAKF+ E  A               R  IVN
Sbjct: 40  HSDVLENLTPPVRKRVEFLREIQNQYDEMEAKFFEERAALEAKYQKLYQPLYTKRYEIVN 99

Query: 208 GTYE 219
           G  E
Sbjct: 100 GVVE 103


>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 372

 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = +1

Query: 31  AEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNG 210
           ++ + +L PNVR+R+ ALR +Q +  ++EAKF  E                  R  IVNG
Sbjct: 41  SDVLENLTPNVRKRVDALRDIQSQHDELEAKFREERAILEAKYQTLYQPLYVKRYEIVNG 100

Query: 211 TYE----PNDD 231
           T E    P DD
Sbjct: 101 TTEVELAPEDD 111


>At4g03620.1 68417.m00497 myosin heavy chain-related contains weak
           similarity to Swiss-Prot:P24733 myosin heavy chain,
           striated muscle [Aequipecten irradians]
          Length = 342

 Score = 29.5 bits (63), Expect = 0.91
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 261 EEEELARAVQNAAITEGEEKKDDKAIEPPMDPNV 362
           + E+L + VQN A+   +EKK+D     P D NV
Sbjct: 214 QNEKLLKKVQNCAVEHNKEKKEDIDGPGPGDNNV 247


>At2g27810.2 68415.m03372 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 660

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 291 NAAITEGEEKKDDKAIEPPMDPNVKGIP 374
           +AA+T GE  KD K   PP  P    +P
Sbjct: 82  SAAVTNGETDKDKKEKPPPPPPGSVAVP 109


>At2g27810.1 68415.m03371 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 709

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 291 NAAITEGEEKKDDKAIEPPMDPNVKGIP 374
           +AA+T GE  KD K   PP  P    +P
Sbjct: 82  SAAVTNGETDKDKKEKPPPPPPGSVAVP 109


>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
           helicase, Mus musculus, PIR:I49731
          Length = 496

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 255 DTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGI 371
           D +EEE    + + +I E EEK D   +E P D N+K +
Sbjct: 44  DDDEEEAVSELNSLSIKE-EEKPDS-ILEEPEDSNIKAV 80


>At2g37840.2 68415.m04646 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 596

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 44  RPYPRMFVGESAP*ELFRRSLSTLRP 121
           +PY   F  +S P ELF RS+S+  P
Sbjct: 301 KPYNFPFKSQSPPVELFNRSISSTAP 326


>At2g37840.1 68415.m04645 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 733

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 44  RPYPRMFVGESAP*ELFRRSLSTLRP 121
           +PY   F  +S P ELF RS+S+  P
Sbjct: 438 KPYNFPFKSQSPPVELFNRSISSTAP 463


>At4g30310.3 68417.m04309 ribitol kinase, putative similar to
           ribitol kinase [Klebsiella pneumoniae]
           gi|2905643|gb|AAC26495
          Length = 451

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 330 KAIEPPMDPNVKGIPDFWYNIFRNV 404
           + + P  DP +K   D  Y IFRN+
Sbjct: 411 QVVHPSSDPKIKKYHDAKYRIFRNL 435


>At4g30310.2 68417.m04308 ribitol kinase, putative similar to
           ribitol kinase [Klebsiella pneumoniae]
           gi|2905643|gb|AAC26495
          Length = 579

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 330 KAIEPPMDPNVKGIPDFWYNIFRNV 404
           + + P  DP +K   D  Y IFRN+
Sbjct: 539 QVVHPSSDPKIKKYHDAKYRIFRNL 563


>At3g48360.1 68416.m05278 speckle-type POZ  protein-related contains
           Pfam PF00651 : BTB/POZ domain; similar to Speckle-type
           POZ protein (SP:O43791) [Homo sapiens]
          Length = 364

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = -3

Query: 172 CKVFHICIRVHVLHCKTWPQCRQTPSEEFSRRGFADEHSGVGT 44
           CK      R+H L C     CR     +F +RG  D+  G  T
Sbjct: 290 CKRMLQLFRLHSLICDQPDSCRVPLCRQFRKRGEQDKKMGEDT 332


>At1g71440.1 68414.m08253 tubulin folding cofactor E / Pfifferling
           (PFI) almost identical to tubulin folding cofactor E
           (Pfifferling; PFI) GI:20514267 from [Arabidopsis
           thaliana]; identical to cDNA tubulin folding cofactor E,
           GI:20514266
          Length = 531

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 226 DDECLNPWRETLKKKS*LGRYKMLPSLRVRKRRMTRL 336
           DD C++ W E LK    L +   L  L + K +++R+
Sbjct: 269 DDNCISDWSEVLK----LSQLPCLEQLYLNKNKLSRI 301


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,794,035
Number of Sequences: 28952
Number of extensions: 168905
Number of successful extensions: 555
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)