Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0400.Seq
         (406 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      20   8.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      20   8.0  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    20   8.0  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 86  PHPRLQRSPCRLLRNPSRGQTGP 154
           PHP L   P  L  +P+    GP
Sbjct: 232 PHPGLSPHPPHLSSHPAIVTPGP 254


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 86  PHPRLQRSPCRLLRNPSRGQTGP 154
           PHP L   P  L  +P+    GP
Sbjct: 124 PHPGLSPHPPHLSSHPAIVTPGP 146


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -2

Query: 378 QPVSRSVSTTSHPPW 334
           QP+  SV    HP W
Sbjct: 67  QPLHPSVPRLGHPQW 81


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,861
Number of Sequences: 336
Number of extensions: 1408
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8752267
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)