Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0400.Seq
(406 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257... 98 2e-21
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918... 98 3e-21
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 95 1e-20
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788... 95 2e-20
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 49 1e-06
03_01_0034 + 318432-318825,318902-319851 49 1e-06
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 49 1e-06
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 49 1e-06
06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379 49 2e-06
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 49 2e-06
02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467 49 2e-06
03_05_0575 + 25747813-25748206,25748567-25748614,25750296-257505... 46 9e-06
01_06_1014 - 33810112-33811995 31 0.46
06_01_1135 - 9379361-9381018,9381356-9381665,9381811-9382764 27 4.3
10_06_0188 - 11603941-11604528 27 5.6
02_01_0108 - 789597-790224,790441-790570,790946-791081 27 5.6
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 27 7.5
03_06_0709 - 35670153-35670350,35671206-35671259,35672444-356725... 27 7.5
12_01_0373 + 2897874-2898911 26 9.9
08_01_0090 - 649631-651162,653189-655019,655313-655365,655731-65... 26 9.9
01_06_0923 + 33044283-33044433,33044826-33045242,33046209-330465... 26 9.9
>03_05_0974 +
29324025-29324117,29325064-29325298,29325385-29325755,
29325864-29326520
Length = 451
Score = 98.3 bits (234), Expect = 2e-21
Identities = 43/50 (86%), Positives = 47/50 (94%)
Frame = -3
Query: 254 RLDHKFDLMYAKRAFVHWXVGEGMXEGEFSEAREDLSALEKDYEEVGMDS 105
R+DHKFDLMY+KRAFVHW VGEGM EGEFSEAREDL+ALEKDYEEVG +S
Sbjct: 390 RIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAES 439
Score = 95.1 bits (226), Expect = 2e-20
Identities = 39/52 (75%), Positives = 47/52 (90%)
Frame = -1
Query: 403 TIQFVDWCPTGFKVGINYQPPTVVPXGDLAKVQRAVCMLSNTTAIAEAWAAL 248
TIQFVDWCPTGFK GINYQPP+VVP GDLAKVQRAVCM+SN+T++ E ++ +
Sbjct: 340 TIQFVDWCPTGFKCGINYQPPSVVPSGDLAKVQRAVCMISNSTSVVEVFSRI 391
>07_03_0994 +
23190344-23190456,23191367-23191581,23191663-23191862,
23192420-23192928,23193048-23193363
Length = 450
Score = 97.9 bits (233), Expect = 3e-21
Identities = 43/49 (87%), Positives = 46/49 (93%)
Frame = -3
Query: 254 RLDHKFDLMYAKRAFVHWXVGEGMXEGEFSEAREDLSALEKDYEEVGMD 108
R+DHKFDLMYAKRAFVHW VGEGM EGEFSEAREDL+ALEKDYEEVG +
Sbjct: 390 RIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438
Score = 97.1 bits (231), Expect = 5e-21
Identities = 40/52 (76%), Positives = 47/52 (90%)
Frame = -1
Query: 403 TIQFVDWCPTGFKVGINYQPPTVVPXGDLAKVQRAVCMLSNTTAIAEAWAAL 248
T+QFVDWCPTGFK GINYQPP+VVP GDLAKVQRAVCM+SN TA+AE ++ +
Sbjct: 340 TVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRI 391
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 95.5 bits (227), Expect = 1e-20
Identities = 39/52 (75%), Positives = 46/52 (88%)
Frame = -1
Query: 403 TIQFVDWCPTGFKVGINYQPPTVVPXGDLAKVQRAVCMLSNTTAIAEAWAAL 248
T+QFVDWCPTGFK GINYQPPT VP GDLAKV+RAVCM+SN TA+AE ++ +
Sbjct: 421 TVQFVDWCPTGFKCGINYQPPTAVPGGDLAKVRRAVCMISNNTAVAEVFSRI 472
Score = 94.7 bits (225), Expect = 2e-20
Identities = 42/49 (85%), Positives = 45/49 (91%)
Frame = -3
Query: 254 RLDHKFDLMYAKRAFVHWXVGEGMXEGEFSEAREDLSALEKDYEEVGMD 108
R+D KFDLMYAKRAFVHW VGEGM EGEFSEAREDL+ALEKDYEEVG +
Sbjct: 471 RIDRKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 519
>11_02_0058 +
7879859-7879951,7880844-7881078,7881165-7881535,
7881648-7882304
Length = 451
Score = 95.1 bits (226), Expect = 2e-20
Identities = 39/52 (75%), Positives = 47/52 (90%)
Frame = -1
Query: 403 TIQFVDWCPTGFKVGINYQPPTVVPXGDLAKVQRAVCMLSNTTAIAEAWAAL 248
TIQFVDWCPTGFK GINYQPP+VVP GDLAKVQRAVCM+SN+T++ E ++ +
Sbjct: 340 TIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVVEVFSRI 391
Score = 92.3 bits (219), Expect = 1e-19
Identities = 41/49 (83%), Positives = 45/49 (91%)
Frame = -3
Query: 254 RLDHKFDLMYAKRAFVHWXVGEGMXEGEFSEAREDLSALEKDYEEVGMD 108
R+D KFDLMY+KRAFVHW VGEGM EGEFSEAREDL+ALEKDYEEVG +
Sbjct: 390 RIDIKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGSE 438
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 49.2 bits (112), Expect = 1e-06
Identities = 18/45 (40%), Positives = 31/45 (68%)
Frame = -3
Query: 254 RLDHKFDLMYAKRAFVHWXVGEGMXEGEFSEAREDLSALEKDYEE 120
R+ +F M+ ++AF+HW GEGM E EF+EA +++ L +Y++
Sbjct: 560 RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 604
>03_01_0034 + 318432-318825,318902-319851
Length = 447
Score = 49.2 bits (112), Expect = 1e-06
Identities = 18/45 (40%), Positives = 31/45 (68%)
Frame = -3
Query: 254 RLDHKFDLMYAKRAFVHWXVGEGMXEGEFSEAREDLSALEKDYEE 120
R+ +F M+ ++AF+HW GEGM E EF+EA +++ L +Y++
Sbjct: 380 RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 49.2 bits (112), Expect = 1e-06
Identities = 18/45 (40%), Positives = 31/45 (68%)
Frame = -3
Query: 254 RLDHKFDLMYAKRAFVHWXVGEGMXEGEFSEAREDLSALEKDYEE 120
R+ +F M+ ++AF+HW GEGM E EF+EA +++ L +Y++
Sbjct: 401 RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 445
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 49.2 bits (112), Expect = 1e-06
Identities = 18/45 (40%), Positives = 31/45 (68%)
Frame = -3
Query: 254 RLDHKFDLMYAKRAFVHWXVGEGMXEGEFSEAREDLSALEKDYEE 120
R+ +F M+ ++AF+HW GEGM E EF+EA +++ L +Y++
Sbjct: 380 RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379
Length = 446
Score = 48.8 bits (111), Expect = 2e-06
Identities = 18/45 (40%), Positives = 31/45 (68%)
Frame = -3
Query: 254 RLDHKFDLMYAKRAFVHWXVGEGMXEGEFSEAREDLSALEKDYEE 120
R+ +F M+ ++AF+HW GEGM E EF+EA +++ L +Y++
Sbjct: 380 RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 424
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 48.8 bits (111), Expect = 2e-06
Identities = 18/45 (40%), Positives = 31/45 (68%)
Frame = -3
Query: 254 RLDHKFDLMYAKRAFVHWXVGEGMXEGEFSEAREDLSALEKDYEE 120
R+ +F M+ ++AF+HW GEGM E EF+EA +++ L +Y++
Sbjct: 380 RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 424
>02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467
Length = 447
Score = 48.8 bits (111), Expect = 2e-06
Identities = 18/45 (40%), Positives = 31/45 (68%)
Frame = -3
Query: 254 RLDHKFDLMYAKRAFVHWXVGEGMXEGEFSEAREDLSALEKDYEE 120
R+ +F M+ ++AF+HW GEGM E EF+EA +++ L +Y++
Sbjct: 380 RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 424
>03_05_0575 +
25747813-25748206,25748567-25748614,25750296-25750565,
25750658-25751334
Length = 462
Score = 46.4 bits (105), Expect = 9e-06
Identities = 17/45 (37%), Positives = 30/45 (66%)
Frame = -3
Query: 254 RLDHKFDLMYAKRAFVHWXVGEGMXEGEFSEAREDLSALEKDYEE 120
R+ +F M+ ++AF+HW EGM E EF+EA +++ L +Y++
Sbjct: 396 RVSEQFTAMFRRKAFLHWYTSEGMDEMEFTEAESNMNDLVAEYQQ 440
>01_06_1014 - 33810112-33811995
Length = 627
Score = 30.7 bits (66), Expect = 0.46
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 224 AKRAFVHWXVGEGMXEGEFSEAREDL 147
+KRA +HW +GEG+ ++ ED+
Sbjct: 187 SKRAMIHWWIGEGLVAATRNQTAEDV 212
>06_01_1135 - 9379361-9381018,9381356-9381665,9381811-9382764
Length = 973
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 355 NYQPPTVVPXGDLAKVQRAVCMLSNTTAIAEAWA 254
N +PP G L V R VC + T +AEA A
Sbjct: 802 NRKPPPPPAQGRLCPVHRGVCSPATTFCLAEAGA 835
>10_06_0188 - 11603941-11604528
Length = 195
Score = 27.1 bits (57), Expect = 5.6
Identities = 16/55 (29%), Positives = 22/55 (40%)
Frame = -1
Query: 382 CPTGFKVGINYQPPTVVPXGDLAKVQRAVCMLSNTTAIAEAWAALTTSSTSCTPS 218
C F P +VP D+ A L A A+ WA T +++ TPS
Sbjct: 44 CRRAFSAAELPAAPPIVPGTDMYFCTWAFFPLGPPAAAADGWAPFTPFNSAPTPS 98
>02_01_0108 - 789597-790224,790441-790570,790946-791081
Length = 297
Score = 27.1 bits (57), Expect = 5.6
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 349 QPPTVVPXGDLAKVQRAVCMLSNTTAIAEAWAALTTSSTSCTPS 218
QP + V GD + A + + A+ W A T SS + TPS
Sbjct: 197 QPKSFVFTGDWMPMSAAAAGQESYSISAQHWPASTASSGNVTPS 240
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 26.6 bits (56), Expect = 7.5
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +2
Query: 86 PHPRLQRSPCRLLRNPSRGQTGPHGLRRTLPPXYPHRRTSARK 214
P PR + P R + +P P RRT P H T +R+
Sbjct: 265 PSPRRRSPPSRRVESPRCRPDSPPIRRRTAPSPIRHGGTPSRR 307
>03_06_0709 -
35670153-35670350,35671206-35671259,35672444-35672527,
35672688-35672902,35673959-35674058,35674178-35674276
Length = 249
Score = 26.6 bits (56), Expect = 7.5
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +3
Query: 99 FSGVHADFFVILLEGRQVLTG 161
F G ADFF +LL G VLTG
Sbjct: 89 FRGRTADFFYMLLFGATVLTG 109
>12_01_0373 + 2897874-2898911
Length = 345
Score = 26.2 bits (55), Expect = 9.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 286 SNTTAIAEAWAALTTSSTSCTPSVLSCT 203
S+TT A A TTS TSC+ + S T
Sbjct: 267 SDTTTTTTAAATTTTSDTSCSTASTSTT 294
>08_01_0090 -
649631-651162,653189-655019,655313-655365,655731-655735,
656209-656411,656837-657292,657718-657805,657917-658017,
658404-658631,659128-659445,659528-659812,660148-660711
Length = 1887
Score = 26.2 bits (55), Expect = 9.9
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 137 RGQTGPHGLRRTLPPXYPHRRTS 205
+G PHG R + PP PH +S
Sbjct: 758 KGTLSPHGSRESPPPSPPHPASS 780
>01_06_0923 +
33044283-33044433,33044826-33045242,33046209-33046538,
33046806-33046876,33047283-33047357,33047435-33047578,
33047645-33047816,33047933-33048616,33048711-33048767,
33048850-33048956,33049485-33049610,33050221-33050295,
33050387-33050499,33050789-33050905,33051384-33051444,
33051690-33051763,33052267-33052388,33052472-33052620,
33053525-33053635,33053946-33054008,33054689-33054722,
33055253-33055375,33055971-33056033,33056130-33056196,
33056311-33056356,33056446-33056552,33056923-33056971,
33057208-33057273,33057544-33057630
Length = 1286
Score = 26.2 bits (55), Expect = 9.9
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = -1
Query: 349 QPPTVVPXGDLAKVQRAVCM-LSNTTAIAEAWAALTTSSTSCTPSVLSC 206
+PP K R V + L T ++ E W ++ C+P SC
Sbjct: 684 EPPCSTTETTKVKYVRGVAVPLGKTKSLVERWEKREATNVECSPPTGSC 732
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,291,670
Number of Sequences: 37544
Number of extensions: 180453
Number of successful extensions: 543
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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