Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0400.Seq
(406 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 99 1e-21
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 99 1e-21
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 98 2e-21
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 98 2e-21
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 98 2e-21
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 97 3e-21
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 97 4e-21
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 49 1e-06
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 49 1e-06
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 49 1e-06
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 49 1e-06
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 49 1e-06
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 49 1e-06
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 49 1e-06
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 49 1e-06
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 49 1e-06
At5g55330.1 68418.m06895 membrane bound O-acyl transferase (MBOA... 27 4.8
At3g49270.1 68416.m05385 expressed protein 26 8.3
At2g01110.1 68415.m00019 thylakoid membrane formation protein / ... 26 8.3
At1g21000.1 68414.m02628 zinc-binding family protein similar to ... 26 8.3
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 98.7 bits (235), Expect = 1e-21
Identities = 41/52 (78%), Positives = 47/52 (90%)
Frame = -1
Query: 403 TIQFVDWCPTGFKVGINYQPPTVVPXGDLAKVQRAVCMLSNTTAIAEAWAAL 248
T+QFVDWCPTGFK GINYQPPTVVP GDLAKVQRAVCM+SN TA+AE ++ +
Sbjct: 340 TVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRI 391
Score = 97.9 bits (233), Expect = 2e-21
Identities = 43/49 (87%), Positives = 46/49 (93%)
Frame = -3
Query: 254 RLDHKFDLMYAKRAFVHWXVGEGMXEGEFSEAREDLSALEKDYEEVGMD 108
R+DHKFDLMYAKRAFVHW VGEGM EGEFSEAREDL+ALEKDYEEVG +
Sbjct: 390 RIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 98.7 bits (235), Expect = 1e-21
Identities = 41/52 (78%), Positives = 47/52 (90%)
Frame = -1
Query: 403 TIQFVDWCPTGFKVGINYQPPTVVPXGDLAKVQRAVCMLSNTTAIAEAWAAL 248
T+QFVDWCPTGFK GINYQPPTVVP GDLAKVQRAVCM+SN TA+AE ++ +
Sbjct: 340 TVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRI 391
Score = 97.9 bits (233), Expect = 2e-21
Identities = 43/49 (87%), Positives = 46/49 (93%)
Frame = -3
Query: 254 RLDHKFDLMYAKRAFVHWXVGEGMXEGEFSEAREDLSALEKDYEEVGMD 108
R+DHKFDLMYAKRAFVHW VGEGM EGEFSEAREDL+ALEKDYEEVG +
Sbjct: 390 RIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 98.3 bits (234), Expect = 2e-21
Identities = 41/52 (78%), Positives = 48/52 (92%)
Frame = -1
Query: 403 TIQFVDWCPTGFKVGINYQPPTVVPXGDLAKVQRAVCMLSNTTAIAEAWAAL 248
TIQFVDWCPTGFK GINYQPPTVVP GDLAKVQRAVCM+SN+T++AE ++ +
Sbjct: 340 TIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRI 391
Score = 97.9 bits (233), Expect = 2e-21
Identities = 43/49 (87%), Positives = 46/49 (93%)
Frame = -3
Query: 254 RLDHKFDLMYAKRAFVHWXVGEGMXEGEFSEAREDLSALEKDYEEVGMD 108
R+DHKFDLMYAKRAFVHW VGEGM EGEFSEAREDL+ALEKDYEEVG +
Sbjct: 390 RIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 98.3 bits (234), Expect = 2e-21
Identities = 41/52 (78%), Positives = 48/52 (92%)
Frame = -1
Query: 403 TIQFVDWCPTGFKVGINYQPPTVVPXGDLAKVQRAVCMLSNTTAIAEAWAAL 248
TIQFVDWCPTGFK GINYQPPTVVP GDLAKVQRAVCM+SN+T++AE ++ +
Sbjct: 340 TIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRI 391
Score = 97.9 bits (233), Expect = 2e-21
Identities = 43/49 (87%), Positives = 46/49 (93%)
Frame = -3
Query: 254 RLDHKFDLMYAKRAFVHWXVGEGMXEGEFSEAREDLSALEKDYEEVGMD 108
R+DHKFDLMYAKRAFVHW VGEGM EGEFSEAREDL+ALEKDYEEVG +
Sbjct: 390 RIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 98.3 bits (234), Expect = 2e-21
Identities = 41/52 (78%), Positives = 48/52 (92%)
Frame = -1
Query: 403 TIQFVDWCPTGFKVGINYQPPTVVPXGDLAKVQRAVCMLSNTTAIAEAWAAL 248
TIQFVDWCPTGFK GINYQPPTVVP GDLAKVQRAVCM+SN+T++AE ++ +
Sbjct: 340 TIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRI 391
Score = 97.9 bits (233), Expect = 2e-21
Identities = 43/49 (87%), Positives = 46/49 (93%)
Frame = -3
Query: 254 RLDHKFDLMYAKRAFVHWXVGEGMXEGEFSEAREDLSALEKDYEEVGMD 108
R+DHKFDLMYAKRAFVHW VGEGM EGEFSEAREDL+ALEKDYEEVG +
Sbjct: 390 RIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 97.5 bits (232), Expect = 3e-21
Identities = 41/52 (78%), Positives = 47/52 (90%)
Frame = -1
Query: 403 TIQFVDWCPTGFKVGINYQPPTVVPXGDLAKVQRAVCMLSNTTAIAEAWAAL 248
TIQFVDWCPTGFK GINYQPP+VVP GDLAKVQRAVCM+SN TA+AE ++ +
Sbjct: 340 TIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRI 391
Score = 96.3 bits (229), Expect = 7e-21
Identities = 42/47 (89%), Positives = 45/47 (95%)
Frame = -3
Query: 254 RLDHKFDLMYAKRAFVHWXVGEGMXEGEFSEAREDLSALEKDYEEVG 114
R+DHKFDLMY+KRAFVHW VGEGM EGEFSEAREDL+ALEKDYEEVG
Sbjct: 390 RIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG 436
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 97.1 bits (231), Expect = 4e-21
Identities = 41/47 (87%), Positives = 45/47 (95%)
Frame = -1
Query: 403 TIQFVDWCPTGFKVGINYQPPTVVPXGDLAKVQRAVCMLSNTTAIAE 263
TIQFVDWCPTGFK GINYQPPTVVP GDLAKVQRAVCM+SN+T++AE
Sbjct: 340 TIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAE 386
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 49.2 bits (112), Expect = 1e-06
Identities = 18/45 (40%), Positives = 31/45 (68%)
Frame = -3
Query: 254 RLDHKFDLMYAKRAFVHWXVGEGMXEGEFSEAREDLSALEKDYEE 120
R+ +F M+ ++AF+HW GEGM E EF+EA +++ L +Y++
Sbjct: 380 RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 49.2 bits (112), Expect = 1e-06
Identities = 18/45 (40%), Positives = 31/45 (68%)
Frame = -3
Query: 254 RLDHKFDLMYAKRAFVHWXVGEGMXEGEFSEAREDLSALEKDYEE 120
R+ +F M+ ++AF+HW GEGM E EF+EA +++ L +Y++
Sbjct: 380 RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 49.2 bits (112), Expect = 1e-06
Identities = 18/45 (40%), Positives = 31/45 (68%)
Frame = -3
Query: 254 RLDHKFDLMYAKRAFVHWXVGEGMXEGEFSEAREDLSALEKDYEE 120
R+ +F M+ ++AF+HW GEGM E EF+EA +++ L +Y++
Sbjct: 380 RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 49.2 bits (112), Expect = 1e-06
Identities = 18/45 (40%), Positives = 31/45 (68%)
Frame = -3
Query: 254 RLDHKFDLMYAKRAFVHWXVGEGMXEGEFSEAREDLSALEKDYEE 120
R+ +F M+ ++AF+HW GEGM E EF+EA +++ L +Y++
Sbjct: 380 RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 49.2 bits (112), Expect = 1e-06
Identities = 18/45 (40%), Positives = 31/45 (68%)
Frame = -3
Query: 254 RLDHKFDLMYAKRAFVHWXVGEGMXEGEFSEAREDLSALEKDYEE 120
R+ +F M+ ++AF+HW GEGM E EF+EA +++ L +Y++
Sbjct: 380 RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 49.2 bits (112), Expect = 1e-06
Identities = 18/45 (40%), Positives = 31/45 (68%)
Frame = -3
Query: 254 RLDHKFDLMYAKRAFVHWXVGEGMXEGEFSEAREDLSALEKDYEE 120
R+ +F M+ ++AF+HW GEGM E EF+EA +++ L +Y++
Sbjct: 381 RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 425
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 48.8 bits (111), Expect = 1e-06
Identities = 18/45 (40%), Positives = 31/45 (68%)
Frame = -3
Query: 254 RLDHKFDLMYAKRAFVHWXVGEGMXEGEFSEAREDLSALEKDYEE 120
R+ +F M+ ++AF+HW GEGM E EF+EA +++ L +Y++
Sbjct: 380 RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 424
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 48.8 bits (111), Expect = 1e-06
Identities = 18/45 (40%), Positives = 31/45 (68%)
Frame = -3
Query: 254 RLDHKFDLMYAKRAFVHWXVGEGMXEGEFSEAREDLSALEKDYEE 120
R+ +F M+ ++AF+HW GEGM E EF+EA +++ L +Y++
Sbjct: 380 RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 424
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 48.8 bits (111), Expect = 1e-06
Identities = 18/45 (40%), Positives = 31/45 (68%)
Frame = -3
Query: 254 RLDHKFDLMYAKRAFVHWXVGEGMXEGEFSEAREDLSALEKDYEE 120
R+ +F M+ ++AF+HW GEGM E EF+EA +++ L +Y++
Sbjct: 381 RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 425
>At5g55330.1 68418.m06895 membrane bound O-acyl transferase (MBOAT)
family protein / wax synthase-related contains
similarity to wax synthase wax synthase - Simmondsia
chinensis, PID:g5020219 similar to wax synthase
[gi:5020219] from Simmondsia chinensis
Length = 346
Score = 27.1 bits (57), Expect = 4.8
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 3 FFYFISPECKTVRVRHKRYFIGLVLFGSLTLXFSGVHADFFV 128
+ Y+++P+ KT +R VLF + + FS VH+ F +
Sbjct: 21 YCYYLTPKIKTSLLRLLSVLPVCVLFLIIPIFFSTVHSSFTI 62
>At3g49270.1 68416.m05385 expressed protein
Length = 148
Score = 26.2 bits (55), Expect = 8.3
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 65 WLSTLRLPHPRLQRSPCRLLRNPSRGQTGPHGLRRTLPP 181
W R P R+ P + NPSRGQT +R + PP
Sbjct: 66 WGRPTRPPPSRMMDYP-KTYPNPSRGQTTNRVIRLSPPP 103
>At2g01110.1 68415.m00019 thylakoid membrane formation protein /
cpTatC (APG2) identical to thylakoid membrane formation
protein (cpTatC) GI:15004994 from [Arabidopsis
thaliana]; contains Pfam profile PF00902: MttB family;
identical to cDNA apg2 for cpTatC GI:15004993
Length = 340
Score = 26.2 bits (55), Expect = 8.3
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +3
Query: 45 RHKRYFIGLVLFGSLTLXFSGVHADFFVI 131
R +R F+G ++FGS L ++G+ ++V+
Sbjct: 202 RAERRFLGPIVFGSSLLFYAGLAFSYWVL 230
>At1g21000.1 68414.m02628 zinc-binding family protein similar to
zinc-binding protein [Pisum sativum] GI:16117799;
contains Pfam profile PF04640 : Protein of unknown
function, DUF597
Length = 246
Score = 26.2 bits (55), Expect = 8.3
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +2
Query: 125 RNPSRGQTGPHGLRRTLPPXYPHRRTSARK 214
R+ S G G PP Y HR +S RK
Sbjct: 209 RSSSSGDEGGFSFSPGTPPIYNHRNSSRRK 238
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,907,805
Number of Sequences: 28952
Number of extensions: 131565
Number of successful extensions: 442
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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