Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0399.Seq
         (396 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8B3X5 Cluster: Major DNA-binding protein; n=9; Rhadino...    32   4.6  
UniRef50_Q6LFN9 Cluster: Putative uncharacterized protein; n=1; ...    32   4.6  
UniRef50_Q25802 Cluster: RpoD protein; n=2; Plasmodium|Rep: RpoD...    31   6.1  
UniRef50_P71126 Cluster: ORF1; Method: conceptual translation su...    31   8.1  
UniRef50_A5K0S5 Cluster: Putative uncharacterized protein; n=1; ...    31   8.1  

>UniRef50_Q8B3X5 Cluster: Major DNA-binding protein; n=9;
           Rhadinovirus|Rep: Major DNA-binding protein - Porcine
           lymphotropic herpesvirus 2
          Length = 1142

 Score = 31.9 bits (69), Expect = 4.6
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = -3

Query: 193 STMSFNFSLCFYI*LNKAI*TVYTCNVNYPCFCFNSVFYFPKKKCVAVICGS 38
           ST+  ++++  Y+           C  NYPC C N++FY  K +   ++  S
Sbjct: 447 STLHPSYNISQYVGSAAVSNVCQQCKGNYPCVCINTLFYRLKDRFPPILASS 498


>UniRef50_Q6LFN9 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 466

 Score = 31.9 bits (69), Expect = 4.6
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 147 TKPFERYTLVMLTT-RVFVLILYFTFQKKNVLL*FVDHLIQENKRVKN 7
           TK F  + L +L    +F +   FTF KK   +  ++H +Q N+  KN
Sbjct: 204 TKQFAHFLLCLLMDISIFQIDGNFTFLKKKHFIDIINHFVQTNRNTKN 251


>UniRef50_Q25802 Cluster: RpoD protein; n=2; Plasmodium|Rep: RpoD
           protein - Plasmodium falciparum
          Length = 960

 Score = 31.5 bits (68), Expect = 6.1
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
 Frame = -3

Query: 307 LNQV*FFK**NLKKYSTPFAYFIKLYTSMLHEQI*FKFSTMSF---NFSLCFYI*LNKAI 137
           +N +   K  N  KY+    +FIK Y + L+    FK++   +   N     YI  N  I
Sbjct: 565 INNIIIKKYLNFYKYTYNKLFFIKKYNNFLYLYEIFKYNWYKYLLLNNKYNLYIIYNNYI 624

Query: 136 *TVYTCNVNYPCFCFNSVFY 77
             +Y  N+N   +   ++FY
Sbjct: 625 KYLYKYNININLYFIKNLFY 644


>UniRef50_P71126 Cluster: ORF1; Method: conceptual translation
           supplied by author; n=15; Campylobacter|Rep: ORF1;
           Method: conceptual translation supplied by author -
           Campylobacter jejuni
          Length = 518

 Score = 31.1 bits (67), Expect = 8.1
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -1

Query: 222 CCTNKSSLNLAQCHLIFPYAFIFD*TKPFERYTLVMLTTRVFVLILYFTF 73
           CC + +S+N ++  L F Y F F  T    ++ +++   +  +L+ +F F
Sbjct: 5   CCIDNNSINCSKAFLNFIYDFTFKITLEKVKFYIILRCCKFHLLVNFFHF 54


>UniRef50_A5K0S5 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium vivax|Rep: Putative uncharacterized protein -
            Plasmodium vivax
          Length = 1221

 Score = 31.1 bits (67), Expect = 8.1
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +3

Query: 165  HREKLNDIVLNLN*ICSCNIDVYNLMK*AKGVLYFFRFYHLKNQTWFSAKHRLPPRLP 338
            H +  N I LN   +C CN+ +  ++K  +GV+ +   Y   N ++F  K R  P +P
Sbjct: 1082 HLKASNIIELNDEDVCICNVKLKYVIKHLRGVIPYKIVY---NNSYFFNKFRKRPNVP 1136


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 294,886,013
Number of Sequences: 1657284
Number of extensions: 4982926
Number of successful extensions: 9173
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9172
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16503508437
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)