Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0399.Seq
         (396 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    27   1.4  
SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces...    25   3.2  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    25   3.2  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     25   4.3  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    25   5.6  

>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -1

Query: 234 YIRRCCTNKSSLNLAQCHLIFPYAFIFD*TKPFERYTLVMLTTRVFVL 91
           Y+ RC   +  ++ A+ HL+F +    D     +R +L+ LTT + +L
Sbjct: 229 YLGRCHLYQRKIHQAKDHLLFSFLQCPDECYHQKRLSLIYLTTCLLIL 276


>SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -3

Query: 151 LNKAI*TVYTCNVNYPCFCFNSVFYFPKKKCVAVICGSFNTRE*KSK 11
           +NK++ T+   N++    C + V   PK     ++C S +TR  KS+
Sbjct: 216 INKSL-TIDGTNISANLSCTHLVIQIPKVIQATLVCSSESTRVVKSR 261


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 274 LKKYSTPFAYFIKLYTSMLHE 212
           LKK   PFA  I+ YTS++ E
Sbjct: 221 LKKSKIPFALVIRPYTSLVEE 241


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 80  LLSKKKMCCCDLWII 36
           LLSKK + C  LWII
Sbjct: 756 LLSKKGLICLSLWII 770


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 135 ERYTLVMLTTRVFVLILYFTFQKKNVLL*FVDHL 34
           ER  L+      FV  LY+TFQ K+ L   +++L
Sbjct: 637 ERAILMSQGESPFVAKLYYTFQSKDYLYLVMEYL 670


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,341,391
Number of Sequences: 5004
Number of extensions: 24455
Number of successful extensions: 44
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)