Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0399.Seq
         (396 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical ...    30   0.69 
Z81055-4|CAB02893.1|  824|Caenorhabditis elegans Hypothetical pr...    27   3.7  
Z92782-10|CAE17812.1|  377|Caenorhabditis elegans Hypothetical p...    27   6.4  
Z81140-4|CAJ55247.1|  463|Caenorhabditis elegans Hypothetical pr...    26   8.5  
Z81140-3|CAJ55246.1|  453|Caenorhabditis elegans Hypothetical pr...    26   8.5  

>AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical
           protein C26G2.1 protein.
          Length = 1270

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 207 ICSCNIDVYNLMK*AKGVLYFFRF 278
           +C C + + N  + +K V YFFRF
Sbjct: 496 LCLCEVVIMNFFRFSKNVFYFFRF 519


>Z81055-4|CAB02893.1|  824|Caenorhabditis elegans Hypothetical
           protein F01G10.5 protein.
          Length = 824

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 17/54 (31%), Positives = 31/54 (57%)
 Frame = +3

Query: 84  TELKQKHG*LTLQVYTVQMALFNQI*KHREKLNDIVLNLN*ICSCNIDVYNLMK 245
           +EL +K   LT+QV  +Q A  N++   R+K  +++  L    + N+D+  L+K
Sbjct: 324 SELNEK---LTMQVKDLQDASENELASFRQKEKELIDELRMATNENVDLEELLK 374


>Z92782-10|CAE17812.1|  377|Caenorhabditis elegans Hypothetical
           protein F14F8.10 protein.
          Length = 377

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 9/39 (23%), Positives = 22/39 (56%)
 Frame = -1

Query: 267 NTVHLLLISLNYIRRCCTNKSSLNLAQCHLIFPYAFIFD 151
           NT+H++++    +R+   N   + +  C L+   +F+F+
Sbjct: 59  NTLHIVILCQKIMRKTSINPFLIGIGVCDLLRTASFVFN 97


>Z81140-4|CAJ55247.1|  463|Caenorhabditis elegans Hypothetical
           protein W10G6.2b protein.
          Length = 463

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 135 ERYTLVMLTTRVFVLILYFTFQKKNVLL*FVDHL 34
           ER  L+      F++ L+F+FQ K  L   +DHL
Sbjct: 183 ERNVLINNFKHPFLVSLHFSFQNKEKLYFVLDHL 216


>Z81140-3|CAJ55246.1|  453|Caenorhabditis elegans Hypothetical
           protein W10G6.2a protein.
          Length = 453

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 135 ERYTLVMLTTRVFVLILYFTFQKKNVLL*FVDHL 34
           ER  L+      F++ L+F+FQ K  L   +DHL
Sbjct: 173 ERNVLINNFKHPFLVSLHFSFQNKEKLYFVLDHL 206


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,301,692
Number of Sequences: 27780
Number of extensions: 134947
Number of successful extensions: 335
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)