Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0399.Seq
         (396 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.3  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   6.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 171  PYAFIFD*TKPFERYTL 121
            PYA + D  KP  RYT+
Sbjct: 964  PYAALIDELKPATRYTI 980


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 171  PYAFIFD*TKPFERYTL 121
            PYA + D  KP  RYT+
Sbjct: 960  PYAALIDELKPATRYTI 976


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 207 ICSCNIDVYNLMK*AKGVLYFF 272
           + SC ++VY ++  A  + YFF
Sbjct: 68  VMSCWMNVYYIVILAWAIFYFF 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,175
Number of Sequences: 438
Number of extensions: 1495
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)