Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0399.Seq
         (396 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP1...    27   3.4  
At1g25540.1 68414.m03171 phytochrome and flowering time regulato...    27   3.4  
At3g03870.2 68416.m00400 expressed protein predicted using genef...    26   7.9  
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c...    26   7.9  

>At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP100,
            putative / heat shock protein clpB, putative /
            HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
            [Phaseolus lunatus]
          Length = 964

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 144  KPFERYTLVMLTTRVFVLILYFTFQKKNVLL*FVDHLIQENKRV 13
            +P +R    M+   + V IL   F +++ +L  VDHL  +NK V
Sbjct: 906  RPVKRVIQQMVENEIAVGILKGDFAEEDTVLVDVDHLASDNKLV 949


>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
           protein (PFT1) PMID: 12815435
          Length = 836

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 270 KNTVHLLLISLNYIRRCCT-NKSSLNLAQ 187
           KNT +L+LIS N++  C   + S+ NL Q
Sbjct: 216 KNTFYLVLISENFVEACAALSHSATNLPQ 244


>At3g03870.2 68416.m00400 expressed protein predicted using
           genefinder
          Length = 266

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 51  TATHFFFGK*NTEL-KQKHG*LTLQVYTVQMALFNQI*KHREKLNDIVLNL 200
           T   FF G  N ++ K K+  L  Q+Y+       ++  H  KLN+ +  +
Sbjct: 197 TVCVFFLGHNNIKICKNKNQMLRFQIYSDDNKRMKEVVNHATKLNEAIFGM 247


>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
           contains Pfam PF01422: NF-X1 type zinc finger; similar
           to transcriptional repressor NF-X1 (SP:Q12986) [Homo
           sapiens]; similar to EST gb|T21002
          Length = 1188

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -3

Query: 124 TCNVNY--PCFCFNSVFYFPKKKCVAVICGSFNTR 26
           TC+V    PC    +   F KKK   VICG  N +
Sbjct: 398 TCHVGPCDPCQVLVNATCFCKKKVETVICGDMNVK 432


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,581,864
Number of Sequences: 28952
Number of extensions: 114118
Number of successful extensions: 232
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)