Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0398.Seq
         (406 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    31   0.004
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    22   2.0  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   4.6  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    21   4.6  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   4.6  
X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       21   6.1  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    21   6.1  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    21   6.1  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   6.1  

>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 31.1 bits (67), Expect = 0.004
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -1

Query: 94  FLQNKEEYKIYIVLSKLSGFYF 29
           F+Q  +EYK Y +LS LSG +F
Sbjct: 152 FVQRNQEYKYYQILSHLSGIFF 173



 Score = 20.6 bits (41), Expect = 6.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 244 LQVCSCSFCFL*KYSSSLAASILPKV 321
           L  CS +F  L +  + LA SIL KV
Sbjct: 50  LVYCSVTFFALSELLTDLATSILLKV 75


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 163 LFFVTPDRILMSFDLLLVE 219
           +FF  P R+LM FD+ + E
Sbjct: 219 VFFTVP-RVLMYFDIFITE 236


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 6/22 (27%), Positives = 15/22 (68%)
 Frame = -2

Query: 219 FHQEQIKRHEDAIRRHKEQMSD 154
           +++   + HE+ + RH E+++D
Sbjct: 103 YNEPYQRTHENMLLRHHEEVAD 124


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 6/22 (27%), Positives = 15/22 (68%)
 Frame = -2

Query: 219 FHQEQIKRHEDAIRRHKEQMSD 154
           +++   + HE+ + RH E+++D
Sbjct: 103 YNEPYQRTHENMLLRHHEEVAD 124


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 6/22 (27%), Positives = 15/22 (68%)
 Frame = -2

Query: 219 FHQEQIKRHEDAIRRHKEQMSD 154
           +++   + HE+ + RH E+++D
Sbjct: 103 YNEPYQRTHENMLLRHHEEVAD 124


>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 210 EQIKRHEDAIRRHKEQMSD 154
           EQ +R  +   RHK+Q  +
Sbjct: 73  EQARREREEQERHKQQQQE 91


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 238 LEQGDCLPPGAD 203
           LE+G C P GA+
Sbjct: 51  LEKGKCTPDGAE 62


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 210 EQIKRHEDAIRRHKEQMSD 154
           EQ +R  +   RHK+Q  +
Sbjct: 224 EQARREREEQERHKQQQQE 242


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 210 EQIKRHEDAIRRHKEQMSD 154
           EQ +R  +   RHK+Q  +
Sbjct: 283 EQARREREEQERHKQQQQE 301


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,084
Number of Sequences: 336
Number of extensions: 1444
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8752267
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)