Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0398.Seq
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B2.04 |cox6||cytochrome c oxidase subunit VI|Schizosaccharo...    27   0.84 
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    27   1.5  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    26   2.6  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   4.5  
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    24   7.8  

>SPAC1B2.04 |cox6||cytochrome c oxidase subunit
           VI|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 27.5 bits (58), Expect = 0.84
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -1

Query: 136 NWTSIVIVFEGLRIFLQNKEEYKIYI 59
           ++ + V +FEG+++ L  KE+Y+ Y+
Sbjct: 95  DFPTAVRIFEGIKVKLPTKEQYQAYV 120


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 237 LNKEIAFHQEQIKRHEDAIRRHKEQMSDI 151
           +N+E  F  E+ KR +D+ R+H   +S I
Sbjct: 324 INREQFFADEEAKRFKDSFRKHFRDISRI 352


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 216 HQEQIKRHEDAIRRHKEQMSDIE 148
           H+E+IK  E+ +   K++MSD++
Sbjct: 766 HEEKIKSFEEKLSALKKEMSDVD 788


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 240  HLNKEIAFHQEQIKRHEDAIRRHKEQM 160
            HLN E++ H+   K+H +    +K+Q+
Sbjct: 1022 HLNNELSSHRNAEKQHLEKENDYKQQL 1048


>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 213 QEQIKRHEDAIRRHKEQMS 157
           +EQIK  E+  +RH+E++S
Sbjct: 20  REQIKVREERAKRHEERLS 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,340,210
Number of Sequences: 5004
Number of extensions: 23624
Number of successful extensions: 77
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)