Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0398.Seq
(406 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0085 - 932461-932464,932656-933002,933387-935041,935084-93... 29 1.1
03_01_0192 - 1534013-1535147,1535249-1535370,1535497-1535556,153... 29 1.8
01_01_0513 + 3736893-3737047,3737298-3737340,3737631-3737765,373... 29 1.8
01_01_0905 + 7116121-7116236,7116285-7116339,7116948-7117005,711... 27 5.6
07_03_0532 + 19171290-19171394,19173122-19173302,19173761-191742... 27 7.5
06_02_0097 + 11710560-11710859,11712605-11713270 27 7.5
04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784 27 7.5
04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093 27 7.5
02_05_0982 - 33303500-33304011,33304091-33304208,33304606-333047... 27 7.5
08_02_0329 - 15833124-15833825 26 9.9
04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-92... 26 9.9
>04_01_0085 -
932461-932464,932656-933002,933387-935041,935084-935882,
936693-936707
Length = 939
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 218 KAISLFKCPFRFVVVPFASCRSIHLL 295
+ I LF C F F PF SC S+ L
Sbjct: 369 RVIHLFDCTFSFASPPFLSCSSLRFL 394
>03_01_0192 -
1534013-1535147,1535249-1535370,1535497-1535556,
1535666-1535764,1535839-1535889,1535974-1536175,
1536709-1536911,1537264-1537350,1537435-1537589,
1537640-1537723,1538121-1538325,1538497-1538724
Length = 876
Score = 28.7 bits (61), Expect = 1.8
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -2
Query: 276 QEAKGTTTNLKGHLNKEIAFHQEQIKRHEDA-IRRHKEQMSDIEKPQ 139
+E +LK L+K A QE+IKR +A +R+ +EQ I K Q
Sbjct: 342 EERDKAAEDLKSALHKVNAEAQEEIKRQAEAHLRQQREQKEVISKLQ 388
>01_01_0513 +
3736893-3737047,3737298-3737340,3737631-3737765,
3737879-3738010,3738129-3738278,3738353-3738373,
3738468-3738675,3738796-3738877,3738983-3739088,
3739245-3739358,3739458-3739685
Length = 457
Score = 28.7 bits (61), Expect = 1.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 212 WWKAISLFKCPFRFVVVPFASCRSI 286
WW + KC +R V++ FA+C ++
Sbjct: 198 WWTCYTEKKCVYRPVILAFAACNNL 222
>01_01_0905 +
7116121-7116236,7116285-7116339,7116948-7117005,
7117637-7117731,7117823-7117926,7118310-7118438,
7118845-7120633,7120849-7121054,7121865-7121949,
7122183-7122422
Length = 958
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 286 NTSTRSKRNNYKPEGALEQGDCLP 215
N+S + K N+Y G L Q CLP
Sbjct: 196 NSSVKKKVNSYMSSGLLTQVSCLP 219
>07_03_0532 +
19171290-19171394,19173122-19173302,19173761-19174245,
19174877-19176283,19176413-19176628
Length = 797
Score = 26.6 bits (56), Expect = 7.5
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = -2
Query: 273 EAKGTTTN-LKGHL---NKEIAFHQEQIKRHEDAIRRHKEQMSDIE 148
EA G TN L+ L N EIA E++K E+A +HK + +E
Sbjct: 566 EALGVQTNELRSQLQSANSEIAGLNEKVKMLEEAEEKHKPLTAGLE 611
>06_02_0097 + 11710560-11710859,11712605-11713270
Length = 321
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 214 VEGNLLVQVPLQVCSCSFCF 273
VEG L VQ+ V CS CF
Sbjct: 72 VEGGLSVQIDPDVLDCSICF 91
>04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784
Length = 1035
Score = 26.6 bits (56), Expect = 7.5
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 218 KAISLFKCPFRFVVVPFASCRSIHLL 295
+ + L C FRF PF CR + L
Sbjct: 368 RVLKLSLCTFRFASPPFLCCRGLRFL 393
>04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093
Length = 1040
Score = 26.6 bits (56), Expect = 7.5
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 218 KAISLFKCPFRFVVVPFASCRSIHLL 295
+ + L C FRF PF CR + L
Sbjct: 368 RVLKLSLCTFRFASPPFLCCRGLRFL 393
>02_05_0982 -
33303500-33304011,33304091-33304208,33304606-33304726,
33304811-33304877,33304968-33305102,33305186-33305297,
33305852-33306009,33306177-33306300,33306406-33306542,
33307284-33307403,33307878-33308025,33308674-33308931,
33309090-33309127,33309232-33309674,33309761-33309845,
33310063-33310123,33310277-33310453,33311611-33312408,
33314394-33314693
Length = 1303
Score = 26.6 bits (56), Expect = 7.5
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 199 FDLLLVEGNLLVQVPLQVCSCS 264
F + L+ NL ++V LQ+C C+
Sbjct: 933 FQVFLLSLNLFIKVKLQICECA 954
>08_02_0329 - 15833124-15833825
Length = 233
Score = 26.2 bits (55), Expect = 9.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 255 TNLKGHLNKEIAFHQEQIKRHEDAIRRH 172
TN + + E HQ +IK+ E IR H
Sbjct: 2 TNQRREMQVEAPHHQTKIKKQETTIRAH 29
>04_01_0084 -
912255-912368,912738-912822,914050-917105,920290-920508
Length = 1157
Score = 26.2 bits (55), Expect = 9.9
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 218 KAISLFKCPFRFVVVPFASCRSIHLL 295
+ I+L +C F F PF C S+ L
Sbjct: 393 RVINLSQCTFSFTSPPFLGCSSLRFL 418
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,111,447
Number of Sequences: 37544
Number of extensions: 139763
Number of successful extensions: 387
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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