Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0398.Seq
         (406 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4541| Best HMM Match : No HMM Matches (HMM E-Value=.)               43   1e-04
SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)              33   0.089
SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_16982| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.5  
SB_42129| Best HMM Match : Endonuclease_NS (HMM E-Value=8.2)           27   4.4  
SB_42127| Best HMM Match : Galactosyl_T (HMM E-Value=0.01)             27   4.4  
SB_40697| Best HMM Match : ABC_tran (HMM E-Value=7.1e-07)              27   4.4  
SB_12396| Best HMM Match : Myc-LZ (HMM E-Value=6.2e-10)                27   4.4  
SB_58866| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=0)             27   4.4  
SB_11879| Best HMM Match : WD40 (HMM E-Value=5.8e-21)                  27   5.8  
SB_33387| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_4541| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 19/40 (47%), Positives = 26/40 (65%)
 Frame = -2

Query: 249 LKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIEKPQ*TG 130
           LK H    IA H+++I+ HE+AIRRHKE +   EK   +G
Sbjct: 103 LKEHQEHLIATHKQEIEHHEEAIRRHKEALKSYEKKDGSG 142



 Score = 30.3 bits (65), Expect = 0.62
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -3

Query: 317 FGKMEAAREDEYFYKKQKEQL 255
           FGKME A E++YF + Q +QL
Sbjct: 80  FGKMEQAHEEQYFRQMQAQQL 100


>SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)
          Length = 1102

 Score = 33.1 bits (72), Expect = 0.089
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = +2

Query: 128  CP---VHWGFSMSDICSL*RLIASSCRLICSWWKAISLFKCPFRFVVVPFASCRSIHLL* 298
            CP   VH   SMS +C    ++ S C   C +   +S+  CP R+VV+  + CR +H++ 
Sbjct: 1037 CPCRYVHVVMSMS-LCRYVHVVMSLCP--CRY-VVMSMSLCPCRYVVMSMSLCRYVHVVM 1092

Query: 299  QLPFYRRYH 325
             +   R  H
Sbjct: 1093 SMSLCRYVH 1101



 Score = 30.7 bits (66), Expect = 0.47
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 149  SMSDICSL*RLIASSCRLICSWWKAI-SLFKCPFRFVVVPFASCRSIHLL*QLPFYRRYH 325
            SMS +C    ++ S C   C +   + S+  CP R+VV+  + CR IH++  +   R  H
Sbjct: 951  SMS-LCRYVHVVMSLCP--CRYVHVVMSMSLCPCRYVVMSMSLCRYIHVVMSMSLCRYVH 1007



 Score = 27.9 bits (59), Expect = 3.3
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +2

Query: 128  CPVHWGFSMSDICSL*RLIASS--CRLICSWWKAISLFKCPFRFVVVPFASCRSIHLL 295
            CP  +      +C    ++ S   CR +      +SLF C  R+VV+  + CR +H++
Sbjct: 979  CPCRYVVMSMSLCRYIHVVMSMSLCRYV---HVVVSLFPC--RYVVISMSLCRYVHVV 1031


>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1411

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -2

Query: 276 QEAKGTTTNLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIEK 145
           Q+ +     LK HL KE   HQ  ++R +   + HK+ +++I K
Sbjct: 690 QQYESEIQGLKDHLAKESQRHQADVRRRD---QEHKKDITNIHK 730


>SB_16982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1031

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
 Frame = -2

Query: 249  LKGHLNKEIAFHQEQ----IKRHEDAIRRHKEQM 160
            LK HL +++A HQE+     ++HE  +   KEQM
Sbjct: 933  LKEHLKRQLASHQEKSTRYTRQHEKKVAALKEQM 966


>SB_42129| Best HMM Match : Endonuclease_NS (HMM E-Value=8.2)
          Length = 251

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 113 NYHYRCPVHWGFSMSDICSL*RLIASSCRLICSW 214
           +Y   CP HWGF  +++    R     C  + SW
Sbjct: 194 DYRLGCP-HWGFEWTEMAGFYRFEPKPCVNMSSW 226


>SB_42127| Best HMM Match : Galactosyl_T (HMM E-Value=0.01)
          Length = 361

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 113 NYHYRCPVHWGFSMSDICSL*RLIASSCRLICSW 214
           +Y   CP HWGF  +++    R     C  + SW
Sbjct: 304 DYRLGCP-HWGFEWTEMAGFYRFEPKPCVNMSSW 336


>SB_40697| Best HMM Match : ABC_tran (HMM E-Value=7.1e-07)
          Length = 659

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 179 LIASSCRLICSWWKAISLFKCPFR 250
           LI + C  +C+W KA+S  +  FR
Sbjct: 124 LITAVCLCLCAWVKAVSFSRLEFR 147


>SB_12396| Best HMM Match : Myc-LZ (HMM E-Value=6.2e-10)
          Length = 293

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 231 KEIAFHQEQIKRHEDAIRRHKEQM 160
           K++  HQEQ+  H + +  HKEQ+
Sbjct: 23  KQLIAHQEQLIAHTEQLIAHKEQL 46


>SB_58866| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=0)
          Length = 567

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -2

Query: 216 HQEQIKRHEDA-IRRHKEQMSDIEKPQ*T 133
           +Q  ++R +DA +RRHK  MS I+K Q T
Sbjct: 381 YQRILRRKQDAMLRRHKSLMSRIKKKQAT 409


>SB_11879| Best HMM Match : WD40 (HMM E-Value=5.8e-21)
          Length = 447

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 125 RCPVHWGFSMSDICSL*R--LIASSCRLICSWWKAISLFKCPFRFVVVPFASC 277
           R  VH G+ M  +  L R  L + +   +C W + + +FK P +F++   + C
Sbjct: 55  RPQVH-GYDMQCVTMLNRYTLASGAEEKLCDWLQVVRVFKAPQQFLITLQSLC 106


>SB_33387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 888

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = -2

Query: 279 LQEAKGTTTNLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIE 148
           L+E +     L+ H+ KEI   +++ +  E  ++    + SD+E
Sbjct: 637 LEETEAMLRKLEAHIEKEITTWEQKYQAAEKELQLANSRFSDLE 680


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,745,234
Number of Sequences: 59808
Number of extensions: 174383
Number of successful extensions: 464
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)