Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0398.Seq
(406 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF326939-1|AAG49389.1| 109|Caenorhabditis elegans mitochondrial... 48 3e-06
AF038604-5|AAB92010.1| 109|Caenorhabditis elegans Hypothetical ... 48 3e-06
U49941-7|AAB53875.1| 88|Caenorhabditis elegans Mitochondrial a... 34 0.034
L12348-1|AAA28107.1| 88|Caenorhabditis elegans ATPase inhibito... 34 0.034
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos... 30 0.73
U00066-1|AAA50742.1| 490|Caenorhabditis elegans High incidence ... 29 1.3
AF099925-12|AAC69509.1| 257|Caenorhabditis elegans Hypothetical... 28 2.2
Z68003-4|CAA91978.2| 277|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z81526-4|CAB04267.2| 430|Caenorhabditis elegans Hypothetical pr... 26 9.0
Z35595-9|CAA84638.1| 367|Caenorhabditis elegans Hypothetical pr... 26 9.0
>AF326939-1|AAG49389.1| 109|Caenorhabditis elegans mitochondrial
ATPase inhibitor protein.
Length = 109
Score = 48.0 bits (109), Expect = 3e-06
Identities = 21/22 (95%), Positives = 21/22 (95%)
Frame = -3
Query: 317 FGKMEAAREDEYFYKKQKEQLQ 252
FGKMEAAREDEYFYKKQK QLQ
Sbjct: 44 FGKMEAAREDEYFYKKQKAQLQ 65
>AF038604-5|AAB92010.1| 109|Caenorhabditis elegans Hypothetical
protein B0546.1 protein.
Length = 109
Score = 48.0 bits (109), Expect = 3e-06
Identities = 21/22 (95%), Positives = 21/22 (95%)
Frame = -3
Query: 317 FGKMEAAREDEYFYKKQKEQLQ 252
FGKMEAAREDEYFYKKQK QLQ
Sbjct: 44 FGKMEAAREDEYFYKKQKAQLQ 65
>U49941-7|AAB53875.1| 88|Caenorhabditis elegans Mitochondrial
atpase inhibitorfamily protein 1 protein.
Length = 88
Score = 34.3 bits (75), Expect = 0.034
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = -2
Query: 276 QEAKGTTTNLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIEK 145
++ K NLK L ++ Q++I+ HE + +H++++ +IEK
Sbjct: 41 RQQKDQLDNLKKKLEADMTQSQQEIRDHEKVLEQHQQRLKEIEK 84
Score = 30.3 bits (65), Expect = 0.55
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = -3
Query: 320 TFGKMEAAREDEYFYKKQKEQL 255
+ G M A RE+EYF ++QK+QL
Sbjct: 26 SLGMMGATREEEYFRRQQKDQL 47
>L12348-1|AAA28107.1| 88|Caenorhabditis elegans ATPase inhibitor
protein.
Length = 88
Score = 34.3 bits (75), Expect = 0.034
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = -2
Query: 276 QEAKGTTTNLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIEK 145
++ K NLK L ++ Q++I+ HE + +H++++ +IEK
Sbjct: 41 RQQKDQLDNLKKKLEADMTQSQQEIRDHEKVLEQHQQRLKEIEK 84
Score = 30.3 bits (65), Expect = 0.55
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = -3
Query: 320 TFGKMEAAREDEYFYKKQKEQL 255
+ G M A RE+EYF ++QK+QL
Sbjct: 26 SLGMMGATREEEYFRRQQKDQL 47
>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
protein 1 protein.
Length = 1963
Score = 29.9 bits (64), Expect = 0.73
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -2
Query: 249 LKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIEKPQ 139
++G + ++ A Q++ D I +HK+Q S +EK Q
Sbjct: 1189 MEGKIEEQKAKFSRQVEELHDQIEQHKKQRSQLEKQQ 1225
>U00066-1|AAA50742.1| 490|Caenorhabditis elegans High incidence of
males (increasedx chromosome loss) protein 10 protein.
Length = 490
Score = 29.1 bits (62), Expect = 1.3
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -2
Query: 240 HLNKEIAFHQEQIKRHEDAIRRHKEQMSD 154
HLN+E+ EQ+K+ + +RH E++ D
Sbjct: 237 HLNEEVLTSPEQLKQEMEERKRHIEELRD 265
>AF099925-12|AAC69509.1| 257|Caenorhabditis elegans Hypothetical
protein K01A2.10 protein.
Length = 257
Score = 28.3 bits (60), Expect = 2.2
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -2
Query: 282 LLQEAKGTTTNLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSD 154
++ E + T NL+ ++ I QEQI D IR+ E++SD
Sbjct: 124 VITEKEAYTKNLEKKVSTTIQKLQEQITIQSDRIRQLNEELSD 166
>Z68003-4|CAA91978.2| 277|Caenorhabditis elegans Hypothetical
protein E02H4.5 protein.
Length = 277
Score = 27.5 bits (58), Expect = 3.9
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -3
Query: 173 TKNKCLTLKSPNELDIDSDSFRRPKN 96
+K+KC +LK +L++ S S + P+N
Sbjct: 71 SKSKCASLKEQTDLNVQSHSQKLPRN 96
>Z81526-4|CAB04267.2| 430|Caenorhabditis elegans Hypothetical
protein F33H2.7 protein.
Length = 430
Score = 26.2 bits (55), Expect = 9.0
Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = -1
Query: 118 IVFEGLRIFLQ-NKEEYKIYIVLSKLS 41
+VFEG ++FL+ N+EEY + +S +S
Sbjct: 194 VVFEGNQVFLRTNQEEYSKELTISYVS 220
>Z35595-9|CAA84638.1| 367|Caenorhabditis elegans Hypothetical
protein C01G6.9 protein.
Length = 367
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 237 LNKEIAFHQEQIKRHEDAIRRHKEQMSDIEKPQ 139
L +E+ + +HE+ IR HK + S+ K Q
Sbjct: 157 LKEEVVIKMAECAQHEEEIRPHKPEDSNSPKKQ 189
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,450,822
Number of Sequences: 27780
Number of extensions: 135963
Number of successful extensions: 415
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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