Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0398.Seq
         (406 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    27   0.081
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   0.57 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   3.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.3  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 27.1 bits (57), Expect = 0.081
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -2

Query: 282 LLQEAKGTTTNLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSD 154
           LL +AK    +L+    K  A H+EQ+ R +  +RR  EQ+++
Sbjct: 89  LLTKAKRFIKSLEERERKH-AVHKEQLSREQRFLRRRLEQLTN 130


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 0.57
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 25  RENKSRRVYLKQYKFYILLCFVGIF 99
           R +  R  Y+K    Y+++CFV +F
Sbjct: 292 RSSLPRISYVKAIDIYLVMCFVFVF 316


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 233 FKCPFRFVVVPFASCRSIHLL*QLPFYRRYH 325
           F+ P   V+ P+     IH+L +L   RRY+
Sbjct: 329 FRSPQTHVMAPWVRRVFIHVLPRLLVMRRYN 359


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 240  HLNKEIAFHQEQIKRHEDAI 181
            ++NK    H+ Q+K  +D I
Sbjct: 1682 NVNKHCTIHRTQVKETDDKI 1701


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,903
Number of Sequences: 438
Number of extensions: 1696
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)