Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0398.Seq
         (406 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g21570.1 68414.m02697 zinc finger (CCCH-type) family protein ...    28   2.1  
At5g23570.1 68418.m02765 XS domain-containing protein / XS zinc ...    26   8.3  
At3g22790.1 68416.m02873 kinase interacting family protein simil...    26   8.3  
At2g45460.1 68415.m05654 forkhead-associated domain-containing p...    26   8.3  
At2g15320.1 68415.m01747 leucine-rich repeat family protein cont...    26   8.3  
At2g03010.1 68415.m00253 expressed protein                             26   8.3  

>At1g21570.1 68414.m02697 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 470

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -2

Query: 261 TTTNLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIEKP 142
           T+T  + HL +E  F    ++   D+ RR  +++SD++ P
Sbjct: 137 TSTASRNHLARERVFRFGSLRYKMDSSRRTLQRISDVDSP 176


>At5g23570.1 68418.m02765 XS domain-containing protein / XS zinc
           finger domain-containing protein-related contains Pfam
           profiles PF03468: XS domain, weak hit to PF03470: XS
           zinc finger domain
          Length = 625

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2

Query: 213 QEQIKRHEDAIRRHKEQMSDIEK 145
           ++Q K+ ED  +RH E++ D+EK
Sbjct: 583 KDQEKKMEDMKKRHHEEIFDLEK 605


>At3g22790.1 68416.m02873 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 1694

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 249 LKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIEK 145
           +K  L +E+A H  Q    ++ IRR K+++  + K
Sbjct: 525 IKEKLEEEVARHINQSSAFQEEIRRLKDEIDSLNK 559


>At2g45460.1 68415.m05654 forkhead-associated domain-containing
           protein / FHA domain-containing protein 
          Length = 915

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -2

Query: 276 QEAKGTTTNLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDI 151
           +E +     LK  +++     QE++KR  DA  RH+ +  ++
Sbjct: 371 EERETAIAELKAAIHRCQIEAQEELKRFSDAAMRHEREQQEV 412


>At2g15320.1 68415.m01747 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611
          Length = 382

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 122 YRCPVHWGFSMSDICSL*RLIASSCRLICS 211
           + C   W F++SD C+  R    +C + CS
Sbjct: 43  WSCLASWDFTVSDPCASPRRTHFTCGITCS 72


>At2g03010.1 68415.m00253 expressed protein 
          Length = 246

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 273 EAKGTTTNLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDI 151
           E  GT T      ++E A  +EQIKR EDA +R  E   ++
Sbjct: 124 ERGGTFTTWTVRKDEEAAAREEQIKR-EDARKRDAESRLEV 163


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,838,506
Number of Sequences: 28952
Number of extensions: 119675
Number of successful extensions: 280
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)