Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0397.Seq
         (409 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0699 + 26394482-26396336,26396807-26397480,26397873-26398166     27   4.3  
03_06_0235 + 32539025-32539886,32540330-32540473,32540595-325407...    27   4.3  

>11_06_0699 + 26394482-26396336,26396807-26397480,26397873-26398166
          Length = 940

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
 Frame = +2

Query: 188 LLDQFRQLDSDEHVLT------PGDVELVMRR*KSLAGSRRSAGDTARPRPR 325
           L +Q RQL  DEH L          VE+ +      A  RRS GD  R RPR
Sbjct: 828 LEEQHRQLHGDEHKLERCRRAHEKKVEVKVDPIGRTAAGRRSKGDGIRNRPR 879


>03_06_0235 +
           32539025-32539886,32540330-32540473,32540595-32540747,
           32540871-32540986,32541254-32541421,32541534-32541758,
           32541884-32542015
          Length = 599

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 269 KSLAGSRRSAGDTARPRPRSADTSR*QSRGI 361
           KS AGS   +G+ ARPRPR     R  S G+
Sbjct: 88  KSSAGS--DSGEAARPRPRVPPVKRVSSAGL 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,768,280
Number of Sequences: 37544
Number of extensions: 131183
Number of successful extensions: 470
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)