Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0397.Seq
         (409 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37276| Best HMM Match : Ras (HMM E-Value=0.00045)                   28   3.4  
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)                      27   4.5  
SB_31598| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_31961| Best HMM Match : EGF (HMM E-Value=0)                         27   5.9  
SB_31268| Best HMM Match : zf-C2H2 (HMM E-Value=5.04467e-44)           27   7.8  
SB_34958| Best HMM Match : PkinA_anch (HMM E-Value=4.5)                27   7.8  

>SB_37276| Best HMM Match : Ras (HMM E-Value=0.00045)
          Length = 100

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -2

Query: 351 DCQREVSALRGRGLA 307
           DC+REVS   GRGLA
Sbjct: 21  DCEREVSVAEGRGLA 35


>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
          Length = 2276

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 200 TGRGVVPAPCPHAPCTQHARP 138
           TG+G VP+P P  P +   +P
Sbjct: 763 TGKGAVPSPSPQRPASSMGKP 783


>SB_31598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 884

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 173 TGQGLLLDQFRQLDSDEHVLTPGD 244
           T Q +L +QF QL +DEHV  P +
Sbjct: 847 TPQAVLPEQFLQLHADEHVELPSE 870


>SB_31961| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2813

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = -3

Query: 218  PSRAAGTGRGVVPAPCPHAPCTQHARPRAEQ*LTTTYLLKHCHTTFSLGGNSC 60
            PS   GT   +VP  C  APC      ++++     Y   HCH      G +C
Sbjct: 907  PSGYTGTKCEIVPDQCASAPCINGGTCKSDR---YGY---HCHCKVGFTGKNC 953


>SB_31268| Best HMM Match : zf-C2H2 (HMM E-Value=5.04467e-44)
          Length = 454

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +2

Query: 200 FRQLDSDEHVLTPGDVELVMRR*KSLAGSRRSAGDTARPRP 322
           F+   S E+  +P D E        +AG   S GD A+  P
Sbjct: 31  FQNSSSQENTFSPKDEETANSTESLIAGQEASGGDDAKASP 71


>SB_34958| Best HMM Match : PkinA_anch (HMM E-Value=4.5)
          Length = 342

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 158 RARADTGQGLLLDQFRQLDSDEHVLTPGDVELVMRR*KSLAGS-RRSAGDTARP 316
           R   DT QGL+ D   +LD+ +H++    +    R  + +A S RR + D  +P
Sbjct: 265 RMLEDTTQGLISDLLVKLDTLQHIIPMHRMSTWARFKRRVARSFRRGSSDDHKP 318


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,644,035
Number of Sequences: 59808
Number of extensions: 137539
Number of successful extensions: 331
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)