Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0397.Seq
         (409 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058308-1|AAL13537.1|  828|Drosophila melanogaster GH07092p pro...    28   5.4  
AE014296-1712|AAF50221.1|  889|Drosophila melanogaster CG6761-PA...    28   5.4  
AY069453-1|AAL39598.1|  653|Drosophila melanogaster LD17482p pro...    27   7.2  
AE014297-2022|AAF55180.2|  668|Drosophila melanogaster CG6194-PA...    27   7.2  
AE013599-3171|AAF46706.1| 1283|Drosophila melanogaster CG10505-P...    27   7.2  
AB002556-1|BAA22868.1|  642|Drosophila melanogaster bHLH-PAS tra...    27   7.2  

>AY058308-1|AAL13537.1|  828|Drosophila melanogaster GH07092p
           protein.
          Length = 828

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 203 GTGRGVVPAPCPHAPCTQHARP 138
           G   G +PA  P APC Q A P
Sbjct: 171 GHSHGPLPAATPSAPCLQQAHP 192


>AE014296-1712|AAF50221.1|  889|Drosophila melanogaster CG6761-PA
           protein.
          Length = 889

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 203 GTGRGVVPAPCPHAPCTQHARP 138
           G   G +PA  P APC Q A P
Sbjct: 232 GHSHGPLPAATPSAPCLQQAHP 253


>AY069453-1|AAL39598.1|  653|Drosophila melanogaster LD17482p
           protein.
          Length = 653

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -3

Query: 182 PAPCPHAPCTQHARPRAE 129
           PAP PH P  Q  RP+AE
Sbjct: 409 PAPKPHVPWQQAKRPQAE 426


>AE014297-2022|AAF55180.2|  668|Drosophila melanogaster CG6194-PA
           protein.
          Length = 668

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -3

Query: 182 PAPCPHAPCTQHARPRAE 129
           PAP PH P  Q  RP+AE
Sbjct: 424 PAPKPHVPWQQAKRPQAE 441


>AE013599-3171|AAF46706.1| 1283|Drosophila melanogaster CG10505-PA
           protein.
          Length = 1283

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +2

Query: 206 QLDSDEHVLTPGDVELVMRR*KSLAGSRRSAGDTARPRPRSAD 334
           QLD D  +L  GD  +V  R  SL+G +++    AR   R AD
Sbjct: 505 QLDRDLELLPRGDATVVGERGISLSGGQKARIALARAVYRQAD 547


>AB002556-1|BAA22868.1|  642|Drosophila melanogaster bHLH-PAS
           transcription factor protein.
          Length = 642

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -3

Query: 179 APCPHAPCTQHARPRAEQ*LTTTYLLKHCHTTFSLGGNS 63
           AP P     Q  RPR+ Q     Y     H+ +S GG S
Sbjct: 451 APTPQQQQQQQQRPRSAQTTPVGYTYDTTHSPYSAGGPS 489


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,699,735
Number of Sequences: 53049
Number of extensions: 209296
Number of successful extensions: 580
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1188481122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)