Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0397.Seq
         (409 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033514-6|CAA22096.2|  373|Caenorhabditis elegans Hypothetical ...    29   1.3  
AL021472-4|CAA16301.1|  149|Caenorhabditis elegans Hypothetical ...    27   3.9  
U41625-5|AAA83327.1|  700|Caenorhabditis elegans Suppressor of a...    27   6.9  
AY091467-1|AAM44123.1|  700|Caenorhabditis elegans SUR-5 protein.      27   6.9  

>AL033514-6|CAA22096.2|  373|Caenorhabditis elegans Hypothetical
           protein Y75B8A.6 protein.
          Length = 373

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
 Frame = -1

Query: 262 SHHEFDVTRCQHXXXXXXXXXXXXXXXXXXXRTRPALSTPDLEPNNNLQRLTYLSIVTQL 83
           S   FDV R Q+                   +  P   TP  +   + QR  YLS+  +L
Sbjct: 229 SQMHFDVKRVQYMTGPPPQMMQQMQMQAPPQQQIPQPQTPQQQVQQHQQRPNYLSVHARL 288

Query: 82  LASAVIPVMSSCVPNVLP-GQL 20
           +  A   V+++  P  LP GQ+
Sbjct: 289 MVQAPPQVITAPAPIPLPQGQM 310


>AL021472-4|CAA16301.1|  149|Caenorhabditis elegans Hypothetical
           protein Y17D7B.4 protein.
          Length = 149

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = -3

Query: 170 PHAPCTQHARPRAEQ*LTTTYL 105
           P  P TQ A PRAEQ L TTY+
Sbjct: 30  PSQPITQ-ANPRAEQTLMTTYM 50


>U41625-5|AAA83327.1|  700|Caenorhabditis elegans Suppressor of
           activated let-60ras protein 5 protein.
          Length = 700

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 122 VIVRLEVGRAECRARADTGQGLLLDQFRQL 211
           V     VG A C A  D G   +LD+FRQ+
Sbjct: 198 VFATAAVGAAWCSASVDFGPAGVLDRFRQV 227


>AY091467-1|AAM44123.1|  700|Caenorhabditis elegans SUR-5 protein.
          Length = 700

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 122 VIVRLEVGRAECRARADTGQGLLLDQFRQL 211
           V     VG A C A  D G   +LD+FRQ+
Sbjct: 198 VFATAAVGAAWCSASVDFGPAGVLDRFRQV 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,074,507
Number of Sequences: 27780
Number of extensions: 93501
Number of successful extensions: 254
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)