Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0397.Seq
         (409 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   1.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.1  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 315 GLAVSPADLRDPAKLFY 265
           G+A+SP D+ D   LF+
Sbjct: 377 GMALSPVDIHDDRTLFF 393


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 32   QNVRHARGHYRNYRR 76
            +  R  RG YRNY R
Sbjct: 1031 KGTRPKRGKYRNYDR 1045



 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 179 APCPHAPCTQHAR 141
           A CP+A C Q  R
Sbjct: 2   ADCPYARCIQERR 14


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,651
Number of Sequences: 438
Number of extensions: 1284
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)