Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0397.Seq
         (409 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52980.1 68416.m05840 RNA recognition motif (RRM)-containing ...    27   3.7  
At3g45540.1 68416.m04918 zinc finger (C3HC4-type RING finger) fa...    27   6.4  
At5g57710.1 68418.m07214 heat shock protein-related contains sim...    26   8.5  

>At3g52980.1 68416.m05840 RNA recognition motif (RRM)-containing
           protein predicted proteins, Arabidopsis thaliana
          Length = 381

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 209 LDSDEHVLTPGDVELVMRR*KSLAGSRRSA 298
           L  +EHV++PG +E + R    L  SRR A
Sbjct: 188 LSDEEHVVSPGSLEKLEREIIELLKSRRGA 217


>At3g45540.1 68416.m04918 zinc finger (C3HC4-type RING finger)
           family protein contains a Prosite:PS00518 Zinc finger,
           C3HC4 type (RING finger), signature
          Length = 348

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 12/20 (60%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = +1

Query: 148 C*VQ-GACGHGAGTTPRPVP 204
           C VQ G C HG G  PRP P
Sbjct: 292 CGVQAGGCKHGHGLPPRPPP 311


>At5g57710.1 68418.m07214 heat shock protein-related contains
           similarity to 101 kDa heat shock protein; HSP101
           [Triticum aestivum] gi|11561808|gb|AAC83689
          Length = 990

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +3

Query: 108 VSRCKLLFGSRSGVLSAGRV 167
           VS+CKL  G R GVLS G V
Sbjct: 634 VSQCKLGNGKRRGVLSKGDV 653


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,721,667
Number of Sequences: 28952
Number of extensions: 86173
Number of successful extensions: 229
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)