Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0396.Seq
         (408 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       24   0.50 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    24   0.50 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   2.0  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    22   2.7  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    21   3.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   6.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    20   8.1  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    20   8.1  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    20   8.1  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    20   8.1  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 24.2 bits (50), Expect = 0.50
 Identities = 15/58 (25%), Positives = 24/58 (41%)
 Frame = -1

Query: 279 YGTDPFRSFYEVLIAADTVLPPKPLSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSW 106
           +GT    + ++  + A  + P   LSS  H    PS R +    R   +Y    + SW
Sbjct: 264 HGTQFISNTWQNSLRAADIQPT--LSSIRHPESNPSERVMRELGRIFRAYCRENHASW 319


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 24.2 bits (50), Expect = 0.50
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -3

Query: 229 YXPASKASELSCS--YSSDTKCTHSGKSSTVALFLPKSKIRILGS 101
           Y P +  + L+    Y+ D  CTH      +++  P+S    +GS
Sbjct: 350 YQPVTNLTNLTYPSYYNQDVSCTHYQNPEYISVVNPESPYPQIGS 394


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 182 GHQVHAQWKVVN 147
           GH +HAQ  VVN
Sbjct: 327 GHHIHAQHHVVN 338


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 189 IRRTPSARTVESRQRSLSSYP 127
           I RTP    +  R+R L  YP
Sbjct: 48  IMRTPEQMFLADRERGLKYYP 68


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 189 IRRTPSARTVESRQRSLSSYP 127
           I RTP    +  R+R L  YP
Sbjct: 48  IMRTPEQLFLAERERGLKYYP 68


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +1

Query: 58   KINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTFH 162
            K +++   G+    L+P   +   V   RP TT+H
Sbjct: 934  KQSKVSWEGNTERVLVPGDQTEAGVFTLRPATTYH 968


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 48  RYCKNKPYPKSRFCRGVP 101
           ++   K +PKS+   GVP
Sbjct: 401 KFWTKKGFPKSKIVLGVP 418


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 297 PFHVIRINKMLSCAG 341
           P H +R+N ++S +G
Sbjct: 376 PVHPVRVNTIISFSG 390


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 297 PFHVIRINKMLSCAG 341
           P H +R+N ++S +G
Sbjct: 376 PVHPVRVNTIISFSG 390


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 364 IPVWSLSAPAHDNILLMRI 308
           +PV ++S    DNILL  +
Sbjct: 663 LPVRNVSVDVRDNILLKNL 681


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,600
Number of Sequences: 336
Number of extensions: 2436
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8857716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)