Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0396.Seq
(408 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 213 5e-56
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 198 1e-51
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 191 2e-49
03_01_0393 - 3062859-3062972,3063027-3063311,3063472-3063759,306... 28 2.5
02_01_0302 - 2021221-2023305 28 2.5
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731... 28 3.3
01_01_0545 - 4002659-4003307,4003415-4003887 28 3.3
02_05_0844 - 32144417-32144764,32145588-32145686,32146218-321464... 27 4.3
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 27 5.7
06_01_1092 + 8966584-8967053,8967737-8967854,8968030-8968253,896... 27 5.7
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442... 27 7.6
09_04_0745 + 19884868-19886000,19886110-19886309,19886422-198866... 27 7.6
03_04_0204 - 18444903-18445054,18445445-18445676,18445765-184458... 27 7.6
01_07_0275 + 42434082-42435152 27 7.6
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 213 bits (520), Expect = 5e-56
Identities = 97/129 (75%), Positives = 107/129 (82%)
Frame = +3
Query: 21 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 201 SSEALEAGXYLLQ*VPRKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 380
SSEALEA KN GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 381 KPQGTVARV 407
KPQGT ARV
Sbjct: 121 KPQGTCARV 129
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 198 bits (484), Expect = 1e-51
Identities = 90/125 (72%), Positives = 101/125 (80%)
Frame = +3
Query: 33 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEA 212
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 213 LEAGXYLLQ*VPRKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQG 392
LEA K+ GKD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP G
Sbjct: 372 LEAARIACNKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTG 431
Query: 393 TVARV 407
T ARV
Sbjct: 432 TCARV 436
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 191 bits (465), Expect = 2e-49
Identities = 87/122 (71%), Positives = 99/122 (81%)
Frame = +3
Query: 42 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 221
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 222 GXYLLQ*VPRKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVA 401
K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT A
Sbjct: 64 ARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCA 123
Query: 402 RV 407
RV
Sbjct: 124 RV 125
>03_01_0393 -
3062859-3062972,3063027-3063311,3063472-3063759,
3063844-3064161,3064232-3064415,3064504-3064659,
3066394-3066620,3066734-3066804,3067090-3067534
Length = 695
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1
Query: 234 ADTVLPPKPLSSAVHIRRTPSARTVES 154
+D + PP P SSA + RT SA TV S
Sbjct: 18 SDQLAPPPPPSSAQSLSRTASAETVLS 44
>02_01_0302 - 2021221-2023305
Length = 694
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 209 GFGGRTVSAAISTS*KLRKGSVPYPHETSPFPRYP 313
G GG+ A +S+ + R+G P P +SP P YP
Sbjct: 394 GRGGQGPPAPVSSPPR-RRGPYPQPPSSSPTPSYP 427
>07_03_0011 +
12370624-12370684,12372573-12372718,12372793-12373129,
12374323-12374452,12375346-12375406,12375572-12375618,
12376873-12376950,12377195-12377345,12377495-12377558,
12377735-12377893,12378007-12378128,12378952-12378981,
12379050-12379124,12379563-12379644,12379809-12379938,
12381417-12382164,12382833-12383054,12383127-12383276,
12384851-12384904,12384985-12385058,12386130-12386204,
12386365-12386584
Length = 1071
Score = 27.9 bits (59), Expect = 3.3
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +1
Query: 13 RSPWGAGQQDATGTAKINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTFHCACTWCP 183
R+ A Q +TGT K + R G + L + V ++ P+ F AC W P
Sbjct: 199 RASKSAWSQSSTGTRKWMQYRPAGETSLTLPCQGVLNLIATGPTPMDVF--ACAWSP 253
>01_01_0545 - 4002659-4003307,4003415-4003887
Length = 373
Score = 27.9 bits (59), Expect = 3.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 306 RGKGEVSCGYGTDPFRSFYEVLI 238
RG GE CGYG+ P SF+ L+
Sbjct: 106 RGPGE-PCGYGSPPISSFFSKLM 127
>02_05_0844 -
32144417-32144764,32145588-32145686,32146218-32146410,
32147049-32147107,32147189-32147263,32147557-32147670,
32147776-32147895,32148204-32148216,32148421-32148512,
32149078-32149164,32149254-32149328,32149630-32149680,
32149852-32149947,32150135-32150221,32150312-32150368,
32150475-32150600,32150709-32150949,32151028-32151114,
32151260-32151637,32152847-32153187
Length = 912
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -1
Query: 162 VESRQRSLSSYPNRRYGSWDQVHPDRTSISDTVYFCSTG 46
+ S + + S GSW H D +++ DT+ CS+G
Sbjct: 758 MNSSNQQIGSPSEEDLGSWGH-HSDPSTVPDTILQCSSG 795
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 27.1 bits (57), Expect = 5.7
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = -1
Query: 228 TVLPPKPLSSAVHIRRTP--SARTVESRQR--SLSSYPNRRYGSWDQVHPDRTSISDTVY 61
T LP PLS + +P S R + SR R SLS P+RR S + DR S
Sbjct: 274 TSLPDHPLSHSRGGSPSPPISGRDMGSRGRRQSLSPTPSRRASSSHSIERDRLSSYSKAS 333
Query: 60 FCSTG 46
S+G
Sbjct: 334 ATSSG 338
>06_01_1092 +
8966584-8967053,8967737-8967854,8968030-8968253,
8968352-8968588,8969122-8969275,8969356-8969438,
8969573-8969687,8969837-8969909,8970005-8970147
Length = 538
Score = 27.1 bits (57), Expect = 5.7
Identities = 15/62 (24%), Positives = 32/62 (51%)
Frame = -3
Query: 250 RGTYCSRYXPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIRILGSGTPRQNLDFG 71
R +YC + S D + T++ +SS++ + L + ++++ + R+NLDF
Sbjct: 213 RDSYCQELQGNQNYGDTS--KQCDYEITYADRSSSMGI-LARDNMQLITADGERENLDFV 269
Query: 70 YG 65
+G
Sbjct: 270 FG 271
>10_08_0106 +
14842748-14843085,14843122-14843250,14844145-14844211,
14847177-14847324,14847998-14848097,14848306-14848384,
14848527-14848687,14848829-14848908,14849319-14849475,
14849575-14849723,14849909-14850076,14850426-14850719,
14851002-14851046,14851213-14851462,14851707-14851835,
14852799-14853039,14853977-14854642
Length = 1066
Score = 26.6 bits (56), Expect = 7.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 234 ADTVLPPKPLSSAVHIRRTPSARTVESRQRSLS 136
AD PP P S H RR+P + ++RS S
Sbjct: 853 ADRSAPPPPASPDRHSRRSPHRSSGSGKKRSSS 885
>09_04_0745 +
19884868-19886000,19886110-19886309,19886422-19886666,
19886880-19887668
Length = 788
Score = 26.6 bits (56), Expect = 7.6
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -1
Query: 237 AADTVLPPKPLSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQVHP 91
AA TV+ + + AVH +P+ + E + ++ P + WD+V P
Sbjct: 314 AAPTVI--RASAGAVHPEESPARASPEEKAADAAARPKLKPLHWDKVRP 360
>03_04_0204 -
18444903-18445054,18445445-18445676,18445765-18445836,
18446201-18446347,18446559-18446614,18446727-18446832,
18446938-18447025,18447112-18447230,18448975-18449580,
18449803-18449898,18450232-18450422,18453287-18453416,
18453531-18453566
Length = 676
Score = 26.6 bits (56), Expect = 7.6
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 200 ELRGFGGRTVSAAISTS*KLRKGSVPYPHETSPFPRYPHQ 319
E+ G GG + SAA S+S L G+ P E++ + H+
Sbjct: 32 EVEGSGGASTSAAASSSQPLDHGAGLVPQESNSMFTHNHE 71
>01_07_0275 + 42434082-42435152
Length = 356
Score = 26.6 bits (56), Expect = 7.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 81 SISDTVYFCSTGSILLAGAPW 19
S SD V + S+LLAG PW
Sbjct: 132 SCSDIVTLAARDSVLLAGGPW 152
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,806,247
Number of Sequences: 37544
Number of extensions: 278200
Number of successful extensions: 811
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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