Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0396.Seq
(408 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041) 35 0.022
SB_38947| Best HMM Match : CD36 (HMM E-Value=1.4e-15) 31 0.36
SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31) 29 1.1
SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_58023| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09) 28 3.4
SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_49549| Best HMM Match : RVT_1 (HMM E-Value=3.6e-11) 27 5.9
SB_24238| Best HMM Match : RecR (HMM E-Value=3.7) 27 5.9
SB_41260| Best HMM Match : DUF1081 (HMM E-Value=1.4) 27 5.9
SB_58923| Best HMM Match : RVT_1 (HMM E-Value=0.022) 27 7.8
SB_30009| Best HMM Match : RVT_1 (HMM E-Value=1.2e-18) 27 7.8
SB_29609| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_25444| Best HMM Match : SH2 (HMM E-Value=6.4) 27 7.8
SB_11072| Best HMM Match : SH2 (HMM E-Value=6.4) 27 7.8
SB_9316| Best HMM Match : SH2 (HMM E-Value=6.4) 27 7.8
SB_7414| Best HMM Match : SH2 (HMM E-Value=6.4) 27 7.8
SB_46049| Best HMM Match : SH2 (HMM E-Value=6.4) 27 7.8
SB_31279| Best HMM Match : PI3K_C2 (HMM E-Value=0.76) 27 7.8
SB_24694| Best HMM Match : RVT_1 (HMM E-Value=0.99) 27 7.8
>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
Length = 50
Score = 35.1 bits (77), Expect = 0.022
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +3
Query: 363 MRGAFGKPQGTVARV 407
MRGAFGKPQGTVARV
Sbjct: 1 MRGAFGKPQGTVARV 15
>SB_38947| Best HMM Match : CD36 (HMM E-Value=1.4e-15)
Length = 314
Score = 31.1 bits (67), Expect = 0.36
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -3
Query: 310 ITWKG*SLMRIWN*SFPQFLRGTYCSRYXPASKASELSCSYSSD 179
I WKG S M +WN S+ + G+ +++ P S + +S++
Sbjct: 241 IAWKGQSSMGLWNSSYANMINGSDGTQFPPGSGPGDTLYFFSTN 284
>SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31)
Length = 718
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 25 GAGQQDATGTAKINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTF 159
G G T N++ +G V LIP+ +I VR +P T+F
Sbjct: 313 GNGTACYTVEGSFNQLAGKGYVEAALIPKGARNIRVREVKPCTSF 357
>SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -1
Query: 216 PKPLSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQ 100
PK SS V+ RT AR ++R++ Y ++YG W Q
Sbjct: 295 PKFFSSIVYYGRT--ARFDYGKRRNMKRYGKKKYGKWRQ 331
>SB_58023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 789
Score = 27.9 bits (59), Expect = 3.4
Identities = 10/38 (26%), Positives = 25/38 (65%)
Frame = +1
Query: 247 LVKTAERISSISA*DFTLSTLSASIKCYHALELIGSRL 360
L+ + +++ ++ D T+ST + ++C + ++L+G RL
Sbjct: 726 LICSKQKLRKLAGKDLTVSTENGQLECVNEVKLLGIRL 763
>SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)
Length = 177
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 252 KNCGKDQFHIRMRLHPFHVIRINKMLS 332
KN +D +RM +HP H IRIN ++S
Sbjct: 127 KNAAEDI--VRMSVHPLHPIRINGVVS 151
>SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1626
Score = 27.1 bits (57), Expect = 5.9
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = -1
Query: 270 DPFRSFYEVLIAADTVLPPKPLSSAVHIRRTPSARTVESRQRSLSSYPNRRYG-SWDQVH 94
DPF SF+ + PPK L + R+ R+ LS + N YG W H
Sbjct: 1164 DPFGSFFRETVFGTREKPPKTLPRRLRARKV-FGRSSCYDDTKLSPFSNTPYGVLWRAFH 1222
>SB_49549| Best HMM Match : RVT_1 (HMM E-Value=3.6e-11)
Length = 520
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/38 (26%), Positives = 25/38 (65%)
Frame = +1
Query: 247 LVKTAERISSISA*DFTLSTLSASIKCYHALELIGSRL 360
L+ + ++ +++ D T+ST + ++C + ++L+G RL
Sbjct: 466 LICSKPKLRTLTGKDLTVSTENGQLECVNEVKLLGIRL 503
>SB_24238| Best HMM Match : RecR (HMM E-Value=3.7)
Length = 153
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 198 AVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQVHP 91
A+ TP+ R E+RQR+ ++ RR S D ++P
Sbjct: 102 AIFTLATPNRRPTETRQRAANTPSARRPSSPDVINP 137
>SB_41260| Best HMM Match : DUF1081 (HMM E-Value=1.4)
Length = 617
Score = 27.1 bits (57), Expect = 5.9
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = -1
Query: 207 LSSAVHIRRTP--SARTVESRQRSLSSYPNRRYGSWDQVHPDRTSISDT 67
LS ++I P S SR +S P R + +HPD S SDT
Sbjct: 140 LSDTLNISHQPIASLSVCSSRILCISPVPGARLIGLETIHPDADSKSDT 188
>SB_58923| Best HMM Match : RVT_1 (HMM E-Value=0.022)
Length = 270
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +1
Query: 247 LVKTAERISSISA*DFTLSTLSASIKCYHALELIGSRL 360
L+ + ++ ++ D T+ST + ++C + ++L+G RL
Sbjct: 160 LICSKPKLRKLAGKDLTVSTENGQLECVNEVKLLGIRL 197
>SB_30009| Best HMM Match : RVT_1 (HMM E-Value=1.2e-18)
Length = 552
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +1
Query: 247 LVKTAERISSISA*DFTLSTLSASIKCYHALELIGSRL 360
L+ + ++ ++ D T+ST + ++C + ++L+G RL
Sbjct: 349 LICSRPKLRKLAGKDLTVSTENGQLECVNEVKLLGIRL 386
>SB_29609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +1
Query: 247 LVKTAERISSISA*DFTLSTLSASIKCYHALELIGSRL 360
L+ + ++ ++ D T+ST + ++C + ++L+G RL
Sbjct: 2 LICSKPKLRKLAGKDLTVSTENGQLECVNKVKLLGIRL 39
>SB_25444| Best HMM Match : SH2 (HMM E-Value=6.4)
Length = 252
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +1
Query: 247 LVKTAERISSISA*DFTLSTLSASIKCYHALELIGSRL 360
L+ + ++ ++ D T+ST + ++C + ++L+G RL
Sbjct: 49 LICSKPKLRKLAGKDLTVSTENGQLECVNEVKLLGIRL 86
>SB_11072| Best HMM Match : SH2 (HMM E-Value=6.4)
Length = 228
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +1
Query: 247 LVKTAERISSISA*DFTLSTLSASIKCYHALELIGSRL 360
L+ + ++ ++ D T+ST + ++C + ++L+G RL
Sbjct: 100 LICSKPKLRKLAGKDLTVSTENGQLECVNEVKLLGIRL 137
>SB_9316| Best HMM Match : SH2 (HMM E-Value=6.4)
Length = 169
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +1
Query: 247 LVKTAERISSISA*DFTLSTLSASIKCYHALELIGSRL 360
L+ + ++ ++ D T+ST + ++C + ++L+G RL
Sbjct: 12 LICSKPKLRKLAGKDLTVSTENGQLECVNKVKLLGIRL 49
>SB_7414| Best HMM Match : SH2 (HMM E-Value=6.4)
Length = 323
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +1
Query: 247 LVKTAERISSISA*DFTLSTLSASIKCYHALELIGSRL 360
L+ + ++ ++ D T+ST + ++C + ++L+G RL
Sbjct: 126 LICSKPKLRKLAGKDLTVSTENGQLECVNEVKLLGIRL 163
>SB_46049| Best HMM Match : SH2 (HMM E-Value=6.4)
Length = 252
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +1
Query: 247 LVKTAERISSISA*DFTLSTLSASIKCYHALELIGSRL 360
L+ + ++ ++ D T+ST + ++C + ++L+G RL
Sbjct: 12 LICSKPKLRKLAGKDLTVSTENGQLECVNEVKLLGIRL 49
>SB_31279| Best HMM Match : PI3K_C2 (HMM E-Value=0.76)
Length = 275
Score = 26.6 bits (56), Expect = 7.8
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -1
Query: 243 LIAADTVLPPKPLSSAVHIRRTPSARTVESRQRSLSSYPNRRY 115
L AA T+ PP P S TP ++ S +R + YP Y
Sbjct: 208 LTAATTIHPPVPPPSVPPPPDTPGVESLASVRRYIMYYPPNFY 250
>SB_24694| Best HMM Match : RVT_1 (HMM E-Value=0.99)
Length = 309
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +1
Query: 247 LVKTAERISSISA*DFTLSTLSASIKCYHALELIGSRL 360
L+ + ++ ++ D T+ST + ++C + ++L+G RL
Sbjct: 147 LICSKPKLRKLAGKDLTVSTENGQLECVNEVKLLGIRL 184
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,487,701
Number of Sequences: 59808
Number of extensions: 306439
Number of successful extensions: 1024
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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