Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0396.Seq
         (408 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            30   0.037
U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles ...    23   4.3  
AY823259-1|AAX18444.1|  194|Anopheles gambiae pburs protein.           23   5.7  
DQ974174-1|ABJ52814.1|  391|Anopheles gambiae serpin 18 protein.       22   7.5  
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    22   7.5  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    22   9.9  
AY146747-1|AAO12062.1|  288|Anopheles gambiae odorant-binding pr...    22   9.9  
AJ618931-1|CAF02009.1|  288|Anopheles gambiae odorant-binding pr...    22   9.9  

>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 29.9 bits (64), Expect = 0.037
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -1

Query: 270 DPFRSFYEVLIAADTVLPPKPLSSAVHIRRTPSARTV--ESRQRSLSSYPNRRYGSWDQV 97
           D  + FY + +   + L   P  + V ++R PSA  +      R+L  Y  R  GSW +V
Sbjct: 2   DAPKQFYSLQLPGKS-LTKAPPGNTVEVKRAPSAEQIIFVRNNRALLIY-ERMGGSWSEV 59

Query: 96  H 94
           H
Sbjct: 60  H 60


>U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles
           gambiae putativetubulin alpha chain mRNA, complete cds.
           ).
          Length = 91

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -2

Query: 101 RYTPTEPRFRIRFIFAVPVASCWPAP 24
           R TP+ PR        VP +S W  P
Sbjct: 48  RSTPSSPRLAQASTCPVPCSSIWSRP 73


>AY823259-1|AAX18444.1|  194|Anopheles gambiae pburs protein.
          Length = 194

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 144 TVDDFPLCVHLVSDEYEQL 200
           T +  P  +HL+ +EY++L
Sbjct: 84  TCETLPSEIHLIKEEYDEL 102


>DQ974174-1|ABJ52814.1|  391|Anopheles gambiae serpin 18 protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 7.5
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +3

Query: 255 NCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARV 407
           NC    +H+R+ L  F+ +        AGA  +Q   + AFG P+   A +
Sbjct: 47  NCAVSPYHVRLALSMFYPL--------AGA-AVQEDFQVAFGLPEDVHAAI 88


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1209

 Score = 22.2 bits (45), Expect = 7.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 105  PKIRIFDLGKKRATVD 152
            P I +++  KKRAT+D
Sbjct: 1103 PDILVYEKRKKRATID 1118


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 190 YSSDTKCTHSGKSST 146
           Y+S TK TH+ KS T
Sbjct: 474 YNSKTKSTHTPKSIT 488


>AY146747-1|AAO12062.1|  288|Anopheles gambiae odorant-binding
           protein AgamOBP42 protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 306 RGKGEVSCGYGTDPFRSFYEVLIAADTVLP 217
           R +G  +C       RS YE    ADT+LP
Sbjct: 238 RREGHDACSLAA---RSLYECYYFADTLLP 264


>AJ618931-1|CAF02009.1|  288|Anopheles gambiae odorant-binding
           protein OBPjj83d protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 306 RGKGEVSCGYGTDPFRSFYEVLIAADTVLP 217
           R +G  +C       RS YE    ADT+LP
Sbjct: 238 RREGHDACSLAA---RSLYECYYFADTLLP 264


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 482,329
Number of Sequences: 2352
Number of extensions: 10010
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 32922351
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)