Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0396.Seq
(408 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48334-1|CAA88308.1| 214|Caenorhabditis elegans Hypothetical pr... 219 5e-58
AF099919-10|AAC68792.1| 205|Caenorhabditis elegans Max-like pro... 29 1.3
Z83228-2|CAB05733.1| 370|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical p... 28 2.3
Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z46791-1|CAA86761.1| 476|Caenorhabditis elegans Hypothetical pr... 28 2.3
AF016450-13|AAB65988.2| 472|Caenorhabditis elegans Hypothetical... 28 3.0
Z81473-6|CAB03895.2| 657|Caenorhabditis elegans Hypothetical pr... 27 3.9
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 27 3.9
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 27 3.9
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 27 3.9
Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical pr... 26 9.1
Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical pr... 26 9.1
Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical pr... 26 9.1
Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical pr... 26 9.1
U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical pr... 26 9.1
AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin pr... 26 9.1
>Z48334-1|CAA88308.1| 214|Caenorhabditis elegans Hypothetical
protein F10B5.1 protein.
Length = 214
Score = 219 bits (536), Expect = 5e-58
Identities = 101/129 (78%), Positives = 107/129 (82%)
Frame = +3
Query: 21 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
MGRRPARCYRY KNKPYPKSRFCRGVPD KIRIFDLG KRA VD FP CVH++S+E E L
Sbjct: 1 MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHL 60
Query: 201 SSEALEAGXYLLQ*VPRKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 380
SSEALEA KNCGKD FH+R+R HPFHV RINKMLSCAGADRLQTGMRGA+G
Sbjct: 61 SSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYG 120
Query: 381 KPQGTVARV 407
KPQG VARV
Sbjct: 121 KPQGLVARV 129
>AF099919-10|AAC68792.1| 205|Caenorhabditis elegans Max-like
protein 2 protein.
Length = 205
Score = 29.1 bits (62), Expect = 1.3
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +3
Query: 81 RFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGXYLLQ 239
R C + K I D K+ A ++ + +++ EYEQ++S +AG +Q
Sbjct: 93 RACDFMSQLKTDISDADKQLAQLNAQAAALEMIASEYEQMASSVPDAGQSTIQ 145
>Z83228-2|CAB05733.1| 370|Caenorhabditis elegans Hypothetical
protein F52F12.2 protein.
Length = 370
Score = 28.7 bits (61), Expect = 1.7
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Frame = -1
Query: 315 CG*RGKGEVSCGYGTDPFRSFYEVLIAADTVLPPKPLSSAVHIRRTPSARTV--ESRQRS 142
C R VS G+ P + IA+ T+LPP S+ +PSA T+ +S
Sbjct: 271 CPRRSSSRVSPSGGSSPIS---DTFIASPTLLPPSTTLSSTPPTISPSAPTLLPTRSPKS 327
Query: 141 LSSYPNRRYGSWDQVHPDRTSISDT 67
P RR +P + + +T
Sbjct: 328 REETPTRREEQQVPPNPSSSEVPET 352
>Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical
protein F36H1.2c protein.
Length = 1427
Score = 28.3 bits (60), Expect = 2.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 35 SKMLPVLQK*TVSEIEVLSGCT*SQDPYLR 124
SK +P ++ TV ++ CT S DPYLR
Sbjct: 1042 SKGIPSAERLTVGHVKKFVPCTSSLDPYLR 1071
>Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical protein
F36H1.2b protein.
Length = 1379
Score = 28.3 bits (60), Expect = 2.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 35 SKMLPVLQK*TVSEIEVLSGCT*SQDPYLR 124
SK +P ++ TV ++ CT S DPYLR
Sbjct: 1013 SKGIPSAERLTVGHVKKFVPCTSSLDPYLR 1042
>Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical protein
F36H1.2a protein.
Length = 1398
Score = 28.3 bits (60), Expect = 2.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 35 SKMLPVLQK*TVSEIEVLSGCT*SQDPYLR 124
SK +P ++ TV ++ CT S DPYLR
Sbjct: 1013 SKGIPSAERLTVGHVKKFVPCTSSLDPYLR 1042
>Z46791-1|CAA86761.1| 476|Caenorhabditis elegans Hypothetical
protein C09G5.2 protein.
Length = 476
Score = 28.3 bits (60), Expect = 2.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 385 GLPNAPRIPVWSLSAPA 335
G PN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248
>AF016450-13|AAB65988.2| 472|Caenorhabditis elegans Hypothetical
protein B0238.9 protein.
Length = 472
Score = 27.9 bits (59), Expect = 3.0
Identities = 18/85 (21%), Positives = 36/85 (42%)
Frame = +1
Query: 61 INRIRNRGSVGVYLIPRSVSSIWVRRERPLTTFHCACTWCPTNMNS*AQRLWRQDXICCN 240
+ R+ + GS + +P+ +++W R+ + L C C M Q L+ ++
Sbjct: 82 VKRLASLGSARGWTVPQRRNNLWERKGQSLIGKFCRCRCDRGQMTRDKQALYEKEK-AVE 140
Query: 241 KYLVKTAERISSISA*DFTLSTLSA 315
K K A++ + F L+A
Sbjct: 141 KEKKKKAKKAKQLPQLQFNSKPLAA 165
>Z81473-6|CAB03895.2| 657|Caenorhabditis elegans Hypothetical
protein C17D12.7 protein.
Length = 657
Score = 27.5 bits (58), Expect = 3.9
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 176 GVRRI*TAELRGFGGRTVSAAISTS*KL-RKGSVPYPHET 292
G+R+ + LR FGG+T+SA I S + R+ +VP +T
Sbjct: 431 GLRKDAESNLRHFGGKTISAQIHGSKPVQRRPTVPKASKT 470
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 27.5 bits (58), Expect = 3.9
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -2
Query: 143 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 42
RS + IE +D+ + TP +P+ +F+F VPVA
Sbjct: 593 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 628
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 27.5 bits (58), Expect = 3.9
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -2
Query: 143 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 42
RS + IE +D+ + TP +P+ +F+F VPVA
Sbjct: 593 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 628
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 27.5 bits (58), Expect = 3.9
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -2
Query: 143 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 42
RS + IE +D+ + TP +P+ +F+F VPVA
Sbjct: 176 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 211
>Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical
protein F15G9.4b protein.
Length = 5198
Score = 26.2 bits (55), Expect = 9.1
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 90 RGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGXYLLQ*VPRKNCGKD 269
RG P PKIR F GK DD+ + + + + ++ +AG Y V GKD
Sbjct: 727 RGKPHPKIRWFKNGKDLIKPDDY---IKINEGQLHIMGAKDEDAGAYSC--VGENMAGKD 781
>Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical
protein F15G9.4a protein.
Length = 5175
Score = 26.2 bits (55), Expect = 9.1
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 90 RGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGXYLLQ*VPRKNCGKD 269
RG P PKIR F GK DD+ + + + + ++ +AG Y V GKD
Sbjct: 727 RGKPHPKIRWFKNGKDLIKPDDY---IKINEGQLHIMGAKDEDAGAYSC--VGENMAGKD 781
>Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical
protein F15G9.4b protein.
Length = 5198
Score = 26.2 bits (55), Expect = 9.1
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 90 RGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGXYLLQ*VPRKNCGKD 269
RG P PKIR F GK DD+ + + + + ++ +AG Y V GKD
Sbjct: 727 RGKPHPKIRWFKNGKDLIKPDDY---IKINEGQLHIMGAKDEDAGAYSC--VGENMAGKD 781
>Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical
protein F15G9.4a protein.
Length = 5175
Score = 26.2 bits (55), Expect = 9.1
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 90 RGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGXYLLQ*VPRKNCGKD 269
RG P PKIR F GK DD+ + + + + ++ +AG Y V GKD
Sbjct: 727 RGKPHPKIRWFKNGKDLIKPDDY---IKINEGQLHIMGAKDEDAGAYSC--VGENMAGKD 781
>U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical
protein W02C12.1 protein.
Length = 1372
Score = 26.2 bits (55), Expect = 9.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 238 CSRYXPASKASELSCSYSSDTKCTHSGKSS 149
C+++ PA+K + Y S CT S K +
Sbjct: 772 CTKHVPATKVVIVRIIYGSSPACTESSKEA 801
>AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin
precursor protein.
Length = 5198
Score = 26.2 bits (55), Expect = 9.1
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 90 RGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGXYLLQ*VPRKNCGKD 269
RG P PKIR F GK DD+ + + + + ++ +AG Y V GKD
Sbjct: 727 RGKPHPKIRWFKNGKDLIKPDDY---IKINEGQLHIMGAKDEDAGAYSC--VGENMAGKD 781
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,418,921
Number of Sequences: 27780
Number of extensions: 221721
Number of successful extensions: 624
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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