Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0396.Seq
         (408 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont...   203   3e-53
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi...   203   3e-53
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near...   203   4e-53
At5g48310.1 68418.m05968 expressed protein                             29   1.2  
At4g24320.1 68417.m03491 hypothetical protein                          28   2.8  
At2g04620.1 68415.m00470 cation efflux family protein potential ...    28   2.8  
At1g53180.1 68414.m06027 expressed protein                             27   4.8  
At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR...    27   6.4  
At1g19510.1 68414.m02430 myb family transcription factor contain...    27   6.4  
At3g19680.1 68416.m02493 expressed protein                             26   8.5  

>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
           contains Pfam profile: PF00826: Ribosomal L10
          Length = 221

 Score =  203 bits (496), Expect = 3e-53
 Identities = 94/129 (72%), Positives = 104/129 (80%)
 Frame = +3

Query: 21  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
           MGRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 201 SSEALEAGXYLLQ*VPRKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 380
           SSEALEA          K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 381 KPQGTVARV 407
           K  GT ARV
Sbjct: 121 KALGTCARV 129


>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
           Wilm's tumor suppressor protein-related similar to tumor
           suppressor GI:575354 from [Oryza sativa]
          Length = 220

 Score =  203 bits (496), Expect = 3e-53
 Identities = 94/129 (72%), Positives = 104/129 (80%)
 Frame = +3

Query: 21  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
           MGRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 201 SSEALEAGXYLLQ*VPRKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 380
           SSEALEA          K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 381 KPQGTVARV 407
           K  GT ARV
Sbjct: 121 KALGTCARV 129


>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
           identical to ribosomal protein L10.e, Wilm's tumor
           suppressor homologue, gi|17682 (Z15157), however
           differences in sequence indicate this is a different
           member of the L10 family
          Length = 221

 Score =  203 bits (495), Expect = 4e-53
 Identities = 94/129 (72%), Positives = 104/129 (80%)
 Frame = +3

Query: 21  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
           MGRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60

Query: 201 SSEALEAGXYLLQ*VPRKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 380
           SSEALEA          K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 381 KPQGTVARV 407
           K  GT ARV
Sbjct: 121 KALGTCARV 129


>At5g48310.1 68418.m05968 expressed protein
          Length = 1156

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -2

Query: 194 FIFVGHQVHAQWKVVNGRSLLTQIEDTDLGIRYTPTEPRFRIR-FIFAVPVASCWPAPH 21
           F+ + +++ A  K+ N   L + I+  +L      T+   R+R F+ AVP  SC P PH
Sbjct: 737 FLIISNEIEADIKITNEHVLPSSIDLANLAAVVYSTQLCHRLRAFLSAVP-PSC-PLPH 793


>At4g24320.1 68417.m03491 hypothetical protein
          Length = 395

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -1

Query: 258 SFYEVLIAADTVLPPKPLSSAVHIRRTPSARTVESRQRSLSSYPNRR 118
           +F++   +  T   P P S  +H+R TP A T+   + ++   P +R
Sbjct: 79  AFFQKYPSVFTTFQPSP-SHPLHVRLTPQALTLHKEEETIHLSPPQR 124


>At2g04620.1 68415.m00470 cation efflux family protein potential
           member of the cation diffusion facilitator (CDF) family,
           or cation efflux (CE) family, see PMID:11500563
          Length = 798

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 26/72 (36%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
 Frame = -3

Query: 268 SFPQFLRG-TYCS-RYXPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIRILGSGT 95
           S PQ   G TY S  Y P    S+   S SS  +  H  KSS   LFL    +R L S  
Sbjct: 18  SVPQPTIGRTYPSFPYTPTPTPSKTRLSSSSSYRSIHGSKSSLSFLFLILFSLRSLYSLL 77

Query: 94  PRQNLDFGYGLF 59
           P       + LF
Sbjct: 78  PFLRSSPSFSLF 89


>At1g53180.1 68414.m06027 expressed protein
          Length = 358

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 30  RPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGK 134
           R +R  RYC + PYP S      P+ K+   D+GK
Sbjct: 27  RRSRGLRYCHSDPYPSSSSTSTSPE-KMGDSDIGK 60


>At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1210

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 303 HVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARV 407
           H+ RIN +L    +D    G+ G  G  + T+ARV
Sbjct: 240 HITRINSLLCLESSDVRMIGILGPPGIGKTTIARV 274


>At1g19510.1 68414.m02430 myb family transcription factor contains
           PFAM profile: PF00249 myb-like DNA binding domain
          Length = 100

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 96  VPDPKIRIFDLGKKRATVDDFPL 164
           VP PK +  D+G K   +DDF L
Sbjct: 69  VPLPKYKTVDVGSKSRGIDDFDL 91


>At3g19680.1 68416.m02493 expressed protein
          Length = 491

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 184 SDTKCTHSGKSSTVALFLPKSKIRILGS 101
           S+T+C+ SG  STVA     SK +I  S
Sbjct: 69  SETRCSSSGNVSTVAACFSLSKAQIEAS 96


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,944,190
Number of Sequences: 28952
Number of extensions: 210550
Number of successful extensions: 657
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)