Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0395.Seq
         (409 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   1.2  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   2.0  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    22   2.0  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   3.5  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   4.6  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      20   8.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      20   8.1  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    20   8.1  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    20   8.1  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -2

Query: 81   SYNTDIVANQDGGENSHATQTHC 13
            +Y+ +++A   GG+    T  HC
Sbjct: 1172 NYSMEVLAYTSGGDGVRTTPIHC 1194


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -2

Query: 93  PSWYSYNTDIVANQDGGENSHATQT 19
           P WY +   +    D G+N   T T
Sbjct: 224 PQWYQHQPLLFTYTDDGKNQQRTGT 248


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 63  LCQYCSYTSWGYNSDGCCK 119
           LC +  Y   G NSDG  K
Sbjct: 52  LCTHVHYAFLGVNSDGTLK 70


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 75  CSYTSWGYNSDG 110
           C Y SWG N  G
Sbjct: 25  CYYASWGANRPG 36



 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 63  LCQYCSYTSWGYNSDG 110
           LC + +Y   G N DG
Sbjct: 49  LCTHVNYAFLGLNDDG 64


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 64  SSKPRWRRKQPRDSNS 17
           S + +WR  QP  SN+
Sbjct: 359 SDEQQWRNNQPSTSNN 374


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 122 PHRQQNPLQINRMHRQ 169
           PH   NPL +N++  Q
Sbjct: 754 PHDINNPLSVNQLTGQ 769


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 122 PHRQQNPLQINRMHRQ 169
           PH   NPL +N++  Q
Sbjct: 646 PHDINNPLSVNQLTGQ 661


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 51  DGGENSHATQTH 16
           DGGE +H   TH
Sbjct: 398 DGGEVAHLPNTH 409


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 51  DGGENSHATQTH 16
           DGGE +H   TH
Sbjct: 346 DGGEVAHLPNTH 357


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,944
Number of Sequences: 336
Number of extensions: 938
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8857716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)