Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0395.Seq
         (409 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)                29   1.5  
SB_41869| Best HMM Match : Laminin_EGF (HMM E-Value=9.7e-23)           27   5.9  
SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 27   5.9  
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)
          Length = 300

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 45  LHLGLLLCQYCSYTSWGYNSDGCCKCRIDSKILCR 149
           +++ +LLC+YC Y      S  CC   I   +LCR
Sbjct: 9   IYVDMLLCRYCRYAVMSILSI-CCYVDIVDMLLCR 42



 Score = 28.3 bits (60), Expect = 2.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 36  CFRLHLGLLLCQYCSYTSWGYNSDGCCKCRIDSKILCR 149
           C+   + +LLC+YC Y      S  CC   I   +LCR
Sbjct: 31  CYVDIVDMLLCRYCRYVVMSILSI-CCYVDIVDMLLCR 67



 Score = 28.3 bits (60), Expect = 2.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 36  CFRLHLGLLLCQYCSYTSWGYNSDGCCKCRIDSKILCR 149
           C+   + +LLC+YC Y      S  CC   I   +LCR
Sbjct: 56  CYVDIVDMLLCRYCRYVVMSILSI-CCYVDIVDMLLCR 92


>SB_41869| Best HMM Match : Laminin_EGF (HMM E-Value=9.7e-23)
          Length = 198

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
 Frame = +3

Query: 66  CQYCSYTSWGYNSDGC--CKCRIDSKILCR*IEC---TGRC 173
           C  C    WG + DGC  C C +   +      C   TG+C
Sbjct: 126 CVRCKPQYWGLSKDGCKACDCNLPGTLYSNTSVCDQTTGQC 166


>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1706

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
 Frame = +3

Query: 66   CQYCSYTSWGYNSDGC--CKCRIDSKILCR*IEC---TGRC 173
            C  C    WG + DGC  C C +   +      C   TG+C
Sbjct: 1048 CVRCKPQYWGLSKDGCKACDCNLPGTLYSNTSVCDQTTGQC 1088


>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 116 QVPHR-QQNPLQINRMHRQMPQVT 184
           QV HR  Q+P   +R H+Q PQVT
Sbjct: 237 QVTHRYHQHPQVTHRYHQQHPQVT 260


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,476,030
Number of Sequences: 59808
Number of extensions: 131633
Number of successful extensions: 273
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)