Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0395.Seq
         (409 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    30   0.74 
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    30   0.74 
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    30   0.74 
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    30   0.74 
Z75532-5|CAD56651.1|  360|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z75532-4|CAA99811.1|  310|Caenorhabditis elegans Hypothetical pr...    27   3.9  
U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    27   6.9  

>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
            K08C7.3b protein.
          Length = 3672

 Score = 29.9 bits (64), Expect = 0.74
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 66   CQYCSYTSWGYNSDGCCKCRIDSKI 140
            C++C +  W Y   GC KC  ++ +
Sbjct: 2066 CEHCEHGYWNYGEHGCDKCDCEADL 2090


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
            K08C7.3a protein.
          Length = 3704

 Score = 29.9 bits (64), Expect = 0.74
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 66   CQYCSYTSWGYNSDGCCKCRIDSKI 140
            C++C +  W Y   GC KC  ++ +
Sbjct: 2066 CEHCEHGYWNYGEHGCDKCDCEADL 2090


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3704

 Score = 29.9 bits (64), Expect = 0.74
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 66   CQYCSYTSWGYNSDGCCKCRIDSKI 140
            C++C +  W Y   GC KC  ++ +
Sbjct: 2066 CEHCEHGYWNYGEHGCDKCDCEADL 2090


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
            protein.
          Length = 3704

 Score = 29.9 bits (64), Expect = 0.74
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 66   CQYCSYTSWGYNSDGCCKCRIDSKI 140
            C++C +  W Y   GC KC  ++ +
Sbjct: 2066 CEHCEHGYWNYGEHGCDKCDCEADL 2090


>Z75532-5|CAD56651.1|  360|Caenorhabditis elegans Hypothetical
           protein C54G10.4b protein.
          Length = 360

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 90  SW-YSYNTDIVANQDGGENSHATQTHC 13
           SW ++Y TDI+ ++   +NS+ +  HC
Sbjct: 207 SWLFNYQTDIIKSRFQADNSYKSYMHC 233


>Z75532-4|CAA99811.1|  310|Caenorhabditis elegans Hypothetical
           protein C54G10.4a protein.
          Length = 310

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 90  SW-YSYNTDIVANQDGGENSHATQTHC 13
           SW ++Y TDI+ ++   +NS+ +  HC
Sbjct: 207 SWLFNYQTDIIKSRFQADNSYKSYMHC 233


>U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical
           protein T13H2.5b protein.
          Length = 1092

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 86  QLGIQQRRLLQVPHRQQNPLQINRMHRQMPQ 178
           QL +QQ++L+Q   +QQ  +Q ++ H+Q  Q
Sbjct: 831 QLQLQQQQLMQHQLQQQLQMQQHQQHQQQQQ 861


>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical protein
            T13H2.5a protein.
          Length = 2471

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 86   QLGIQQRRLLQVPHRQQNPLQINRMHRQMPQ 178
            QL +QQ++L+Q   +QQ  +Q ++ H+Q  Q
Sbjct: 2210 QLQLQQQQLMQHQLQQQLQMQQHQQHQQQQQ 2240


>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 66  CQYCSYTSWGYNSDGCCKCRIDS 134
           C  C+  ++G+   GC KC  D+
Sbjct: 827 CDQCAIGTYGFGPSGCKKCDCDA 849


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,346,891
Number of Sequences: 27780
Number of extensions: 89699
Number of successful extensions: 235
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)