Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0395.Seq
         (409 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12400.1 68418.m01458 PHD finger transcription factor, putati...    32   0.13 
At4g12050.1 68417.m01917 DNA-binding protein-related contains Pf...    28   2.1  
At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) / chlorop...    27   3.7  
At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorop...    27   3.7  
At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) / chlorop...    27   3.7  
At3g11800.1 68416.m01446 expressed protein                             27   6.4  
At1g53350.1 68414.m06048 disease resistance protein (CC-NBS-LRR ...    27   6.4  

>At5g12400.1 68418.m01458 PHD finger transcription factor, putative
           similarity to predicted proteins, Arabidopsis thaliana
          Length = 1595

 Score = 32.3 bits (70), Expect = 0.13
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 84  TSWGYNSDGCCKCRIDSKILC 146
           TS+  NSD CC C++D  +LC
Sbjct: 602 TSFDRNSDDCCFCKMDGSLLC 622


>At4g12050.1 68417.m01917 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 339

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 83  YQLGIQQRRLLQVPHRQQNPLQINRMHRQMPQ 178
           +QL +QQ++  Q  H+QQ   Q    H Q PQ
Sbjct: 22  FQLHLQQQQQHQQQHQQQQQQQFFLHHHQQPQ 53


>At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) /
           chlorophyll b synthase identical to chlorophyll a
           oxygenase GI:5853117 from [Arabidopsis thaliana];
           contains Pfam PF00355 Rieske [2Fe-2S] domain
          Length = 433

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 75  CSYTSWGYNSDGCCKCRIDSKIL 143
           C Y  W Y++DG CK    +K+L
Sbjct: 281 CPYHGWEYSTDGECKKMPSTKLL 303


>At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) /
           chlorophyll b synthase identical to chlorophyll a
           oxygenase GI:5853117 from [Arabidopsis thaliana];
           contains Pfam PF00355 Rieske [2Fe-2S] domain
          Length = 511

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 75  CSYTSWGYNSDGCCKCRIDSKIL 143
           C Y  W Y++DG CK    +K+L
Sbjct: 281 CPYHGWEYSTDGECKKMPSTKLL 303


>At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) /
           chlorophyll b synthase identical to chlorophyll a
           oxygenase GI:5853117 from [Arabidopsis thaliana];
           contains Pfam PF00355 Rieske [2Fe-2S] domain
          Length = 536

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 75  CSYTSWGYNSDGCCKCRIDSKIL 143
           C Y  W Y++DG CK    +K+L
Sbjct: 281 CPYHGWEYSTDGECKKMPSTKLL 303


>At3g11800.1 68416.m01446 expressed protein
          Length = 246

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 96  YNSDGCCKCRIDSKILC 146
           +  DGC KC  DSK +C
Sbjct: 157 WKKDGCSKCSGDSKFVC 173


>At1g53350.1 68414.m06048 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 906

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 47  PSWFATMSVL*LYQLGIQQRRLLQVPH--RQQNPLQINRMHRQMPQVT 184
           PS    + +L    LG+  R L+ VP+  ++   L+  R+ R MP  T
Sbjct: 615 PSSLGNLKLLLCLNLGVADRLLVHVPNVLKEMQELRYLRLPRSMPAKT 662


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,950,773
Number of Sequences: 28952
Number of extensions: 76977
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)