Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0394.Seq
         (409 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P07856 Cluster: Sericin 1 precursor; n=4; Bombyx mori|R...    48   7e-05
UniRef50_Q8AXX1 Cluster: Putative gag protein; n=1; Danio rerio|...    33   2.9  

>UniRef50_P07856 Cluster: Sericin 1 precursor; n=4; Bombyx mori|Rep:
            Sericin 1 precursor - Bombyx mori (Silk moth)
          Length = 1186

 Score = 48.0 bits (109), Expect = 7e-05
 Identities = 20/31 (64%), Positives = 20/31 (64%)
 Frame = +2

Query: 287  EDGFWWWXXRKSXSXHKXATXXHSQXDXTST 379
            EDGFWWW  RKS S HK AT   S  D TST
Sbjct: 1075 EDGFWWWNRRKSGSGHKSATVQSSTTDKTST 1105


>UniRef50_Q8AXX1 Cluster: Putative gag protein; n=1; Danio
           rerio|Rep: Putative gag protein - Danio rerio
           (Zebrafish) (Brachydanio rerio)
          Length = 612

 Score = 32.7 bits (71), Expect = 2.9
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +1

Query: 97  RPLAXPVTLMXAPXKNPPRALXAALKDIVXVAXMEAXHPPTVPXQV 234
           +PL+ P TL   P  NPP +L  AL      +  +A   PTVP Q+
Sbjct: 283 QPLSNPFTLSSIPPYNPPPSLHQAL---THSSSTDAAQHPTVPSQI 325


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,222,800
Number of Sequences: 1657284
Number of extensions: 2788227
Number of successful extensions: 3826
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3823
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 18196175969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)