Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0394.Seq
         (409 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64835-6|AAG24199.1|  341|Caenorhabditis elegans Serpentine rece...    28   3.0  
U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr...    26   9.1  

>U64835-6|AAG24199.1|  341|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 9 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = -2

Query: 240 LLHLXWNRRWMXRFHXGYXNYILQCCXQRTW 148
           LLHL  +  W       Y NYIL      TW
Sbjct: 95  LLHLFIHSMWSLLLSFAYRNYILSSAPPSTW 125


>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical
           protein F54D11.2 protein.
          Length = 1145

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 130 APXKNPPRALXAALKDIVXVAXMEAXHPPTVPXQVEE 240
           AP KNPP+A  + +K     A  EA  PP  P + +E
Sbjct: 171 APTKNPPKARKSNVKKPEKEA--EALAPPEPPAEPQE 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,648,456
Number of Sequences: 27780
Number of extensions: 67834
Number of successful extensions: 87
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)