Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0394.Seq
         (409 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    20   9.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   9.4  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    20   9.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   9.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    20   9.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    20   9.4  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -2

Query: 54  CYHRMYWIL 28
           C++ MYWI+
Sbjct: 418 CFNLMYWII 426


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -2

Query: 54  CYHRMYWIL 28
           C++ MYWI+
Sbjct: 418 CFNLMYWII 426


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -2

Query: 66  IHXCCYHRMYWIL 28
           IH C   R YW L
Sbjct: 81  IHPCSSFRFYWDL 93


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -2

Query: 66  IHXCCYHRMYWIL 28
           IH C   R YW L
Sbjct: 81  IHPCSSFRFYWDL 93


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -2

Query: 66  IHXCCYHRMYWIL 28
           IH C   R YW L
Sbjct: 81  IHPCSSFRFYWDL 93


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -2

Query: 54  CYHRMYWIL 28
           C++ MYWI+
Sbjct: 356 CFNLMYWII 364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,982
Number of Sequences: 438
Number of extensions: 971
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)