Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0393.Seq
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    29   0.21 
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    27   1.1  
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.5  
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy...    24   7.9  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    24   7.9  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    24   7.9  

>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 29.5 bits (63), Expect = 0.21
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 105 FFSW-HTHSVVVSKMILVAHATGFGFATVVAHYI 203
           FF W + HSV VS +I V+ + GF F      Y+
Sbjct: 93  FFFWRNNHSVFVSCLIYVSVSVGFAFIATTLGYV 126


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 351 TPTISTEASVTINVSPPKSVHRSSAPDRMKSGILSIDVPI 232
           +P+IS      +NV PP  V R SAP ++     SI  P+
Sbjct: 567 SPSISVTQRPAVNVGPPPYV-RPSAPSKLPDTRQSIGDPL 605


>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
 Frame = -2

Query: 363 DVFVTP-TISTEASVTINVSPPKSVHRSSAPDRMKSGILSIDVPIRELQRCGQSECSVRR 187
           D  +TP T  T   V  +  P   V RSS+PD+M S   ++++  R      +      +
Sbjct: 193 DSDLTPHTDFTNRFVDSDFDPDSGVGRSSSPDQMMSRNNNLNINARMTSTSSKPYAKENQ 252

Query: 186 QLQSRTPLRVRRESF*KQRRSVCA 115
           QL S      ++ SF   R    A
Sbjct: 253 QLISSMAPVEQKNSFSTAREQYVA 276


>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 321

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 190 SHTTFGLSTSLQFSYRHVD 246
           + T   + T+LQ+ YRH+D
Sbjct: 37  NQTKNAVKTALQYGYRHID 55


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 352 NSYYKHRSVSDNQCI 308
           N+YY+ +S  +NQCI
Sbjct: 115 NAYYQMKSYHENQCI 129


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 167 RCVCDENHFRNNDGVCVPAEECPSYV 90
           +CVC   ++R        A++CPS++
Sbjct: 186 QCVCGRQNWRRPVNFASHAKQCPSFL 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,709,728
Number of Sequences: 5004
Number of extensions: 34326
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)