Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0393.Seq
         (409 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582...    29   1.4  
11_04_0367 - 16840732-16843428,16844425-16844760                       28   2.5  
05_04_0260 + 19501643-19503010                                         28   3.3  
12_02_0491 + 19648754-19650021,19650135-19650248,19650871-196514...    27   7.6  
07_01_0639 - 4785446-4786186,4786429-4786656,4786727-4786872,478...    27   7.6  
06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047     27   7.6  
05_04_0259 + 19494629-19495394,19495408-19495949                       27   7.6  
05_04_0257 + 19487757-19489070                                         27   7.6  

>02_01_0782 +
           5827364-5827441,5827733-5827787,5828761-5828849,
           5829167-5829191,5829645-5829683,5830316-5830433,
           5830857-5831023,5831155-5831518,5831589-5831701,
           5832185-5832310,5832436-5833339,5833694-5834036
          Length = 806

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
 Frame = -2

Query: 363 DVFVTPTISTEASVTINVSPPKSVHRSSAPDRMKSGILSIDVPI----RELQRCGQSECS 196
           +VF    IS   S++ N S  KS+  S     +K   +S  + +     ++Q  G+S   
Sbjct: 391 NVFHLTLISRSQSMSANHSMSKSMSISPRRSPVKRSAISPKISLISRSPDVQGHGRSPVR 450

Query: 195 VRRQLQSRTPLRVRRESF*KQRRSVCAS*RMSFLRHQ 85
              + +SR+P R +  S   QRRS   S   S LR +
Sbjct: 451 APERSESRSPPREKSISMSPQRRSARRSKSRSPLREK 487


>11_04_0367 - 16840732-16843428,16844425-16844760
          Length = 1010

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 346 YYKHRSVSDNQCIPAKECPPVKCTRP 269
           YYK+ S+SDN  +  +  P ++C RP
Sbjct: 147 YYKYFSISDNDGV-RRTAPGIECVRP 171


>05_04_0260 + 19501643-19503010
          Length = 455

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +2

Query: 224 SSRIGTSMDKIPDFIRSGALDRWTLFGGDTLIVTDASVLIVGVTN 358
           S+R+G ++  I   ++S     W +FG ++++ T    L +GV +
Sbjct: 363 STRVGPAVPTIELVLQSTGAS-WVVFGANSMVATKGGALCLGVVD 406


>12_02_0491 +
           19648754-19650021,19650135-19650248,19650871-19651427,
           19651446-19651529,19651566-19651783,19652004-19652309
          Length = 848

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 196 CATTVAKPNPVACATRIILETTTECVCQL 110
           CA  +    P  CATR +L TT    CQL
Sbjct: 355 CAVWMNMNIPCKCATRHVLITTFRIECQL 383


>07_01_0639 -
           4785446-4786186,4786429-4786656,4786727-4786872,
           4786986-4787186,4787256-4787432,4787741-4788359
          Length = 703

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 170 VRLCNCRRTLHSDCPHRCSSR 232
           V +   R TLHS C HR  SR
Sbjct: 326 VEVAKARATLHSQCGHRRGSR 346


>06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047
          Length = 396

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 384 YQTLAFLDVFVTPTISTEASVTINVSPPKSVHRSSAP 274
           +Q + F+D ++     T  S+ +NV  P +  RSSAP
Sbjct: 54  FQYIQFMDSWIE---QTSLSLDLNVGLPSTARRSSAP 87


>05_04_0259 + 19494629-19495394,19495408-19495949
          Length = 435

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +2

Query: 224 SSRIGTSMDKIPDFIRSGALDRWTLFGGDTLIVTDASVLIVGVTN 358
           S+R G ++  +   ++S A+  W +FG ++++ T    L  GV +
Sbjct: 343 STRAGPAVPTVELVLQSKAVS-WVVFGANSMVATKDGALCFGVVD 386


>05_04_0257 + 19487757-19489070
          Length = 437

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +2

Query: 227 SRIGTSMDKIPDFIRSGALDRWTLFGGDTLIVTDASVLIVGVTN 358
           +R+G ++  +    +S A   W +FG ++++ T    L +GV +
Sbjct: 346 TRVGPAVPTVELVFQSEATS-WVVFGANSMVATKGGALCLGVVD 388


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,511,659
Number of Sequences: 37544
Number of extensions: 245356
Number of successful extensions: 671
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)