Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0393.Seq
(409 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16) 31 0.27
SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37) 30 0.84
SB_23520| Best HMM Match : TIL (HMM E-Value=0.0062) 29 1.1
SB_17530| Best HMM Match : EGF_CA (HMM E-Value=0) 29 1.5
SB_48543| Best HMM Match : Exo_endo_phos (HMM E-Value=7.8e-06) 29 1.9
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_10557| Best HMM Match : GCC2_GCC3 (HMM E-Value=7.2e-15) 28 2.6
SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_37609| Best HMM Match : Extensin_2 (HMM E-Value=0.081) 27 4.5
SB_33579| Best HMM Match : Laminin_G_2 (HMM E-Value=3.2e-34) 27 4.5
SB_15408| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_56223| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_35607| Best HMM Match : Activin_recp (HMM E-Value=1.4) 27 5.9
SB_48169| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_48384| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_15476| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_786| Best HMM Match : EGF (HMM E-Value=0) 27 7.8
>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
Length = 705
Score = 31.5 bits (68), Expect = 0.27
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -1
Query: 373 CLSGCVCNSYYKHR--SVSDNQCIPAKECPPVKCTRPNEVWDLVHR 242
C+ GC C + R +V QCI KECP + + + D V++
Sbjct: 211 CVEGCECKEEFVQRVNAVGKVQCIKRKECPCIHDAKIYKPGDKVYK 256
>SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)
Length = 1632
Score = 29.9 bits (64), Expect = 0.84
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Frame = -1
Query: 388 DIPNPCLSGCVCNSYYKHRSVSDNQCIPAKECPPVKCTRPNEVWDLVHRRAYTRTATMWT 209
D PC+S +C SVSD C P+K C V D + R + + + T+
Sbjct: 697 DPVTPCVSDTLCRP---SESVSDTLCRPSKSGSDTLCRPSESVSDTLCRPSESGSDTLCR 753
Query: 208 IRM*CATTVAKPNPVACATRI--ILETTTECVCQLK 107
+ T +P+ T + + + T CV +K
Sbjct: 754 PSESVSDTPCRPSESGSDTHVDPVKVSVTPCVDPVK 789
>SB_23520| Best HMM Match : TIL (HMM E-Value=0.0062)
Length = 238
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 179 KAEPRCVCDENHFRNNDGVCVPAEECP 99
+A+ RC CD+ N G+C+ EECP
Sbjct: 28 RAKLRCCCDDGLVFYN-GLCIRVEECP 53
>SB_17530| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 165
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -3
Query: 164 CVCDENHFRNNDGVCVPAEECPSYVINTEH*WKTNGICKN 45
C C E + RN+ G C EC + +H N +C N
Sbjct: 27 CQCAEGYERNSQGKCADVNECKT----GKHDCSVNALCTN 62
>SB_48543| Best HMM Match : Exo_endo_phos (HMM E-Value=7.8e-06)
Length = 768
Score = 28.7 bits (61), Expect = 1.9
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -2
Query: 390 ATYQTLAFLDVFVTPTISTEASVTINVSPPKSVHR 286
A ++ L ++D+F+T + S+ VT+ PP V++
Sbjct: 340 AVFKALEYVDLFITASSSSMRLVTVYRPPPSKVNK 374
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 28.7 bits (61), Expect = 1.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 149 NHFRNNDGVCVPAEECPSY 93
N FRNN C+P CP+Y
Sbjct: 1318 NQFRNNCKPCIPGMYCPTY 1336
Score = 28.3 bits (60), Expect = 2.6
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = -1
Query: 382 PNPCLSGCVCNSYYKHRSVSDNQCIPAKECPPVKCTRPN 266
P PC G ++ Y + CIP CP + + P+
Sbjct: 1304 PQPCWPGTYADTEYNQFRNNCKPCIPGMYCPTYRLSYPS 1342
>SB_10557| Best HMM Match : GCC2_GCC3 (HMM E-Value=7.2e-15)
Length = 1215
Score = 28.3 bits (60), Expect = 2.6
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Frame = -1
Query: 385 IPNPCLSGCVCNSYYKHRSVSDNQCIPAKECPPVKCTRPNEVWD---LVHRRAYT 230
IP PC SG N+ RSV C + C T P D RAYT
Sbjct: 671 IPQPCPSGYYNNATGVKRSVDCTPCPAGRYCAGFGATEPTGPCDAGFYCRERAYT 725
>SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1530
Score = 27.9 bits (59), Expect = 3.4
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = -3
Query: 164 CVCD-ENHFRNNDGVCVPAEECPSYVINTEH*WK--TNGICKNC 42
C C+ E NN+ CV +CP Y +T + + C NC
Sbjct: 1160 CYCEKEGELMNNEHKCVDKTQCPCYYGDTMYKYGEIRKDRCNNC 1203
>SB_37609| Best HMM Match : Extensin_2 (HMM E-Value=0.081)
Length = 1617
Score = 27.5 bits (58), Expect = 4.5
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -2
Query: 321 TINVSPPKSVHRSSAPD 271
T++VSPPK+V S APD
Sbjct: 1008 TLSVSPPKNVSMSPAPD 1024
>SB_33579| Best HMM Match : Laminin_G_2 (HMM E-Value=3.2e-34)
Length = 1071
Score = 27.5 bits (58), Expect = 4.5
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -1
Query: 382 PNPCLSGCVCNSYY 341
PNPCL+G VC+ +Y
Sbjct: 382 PNPCLNGGVCHIWY 395
>SB_15408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 779
Score = 27.5 bits (58), Expect = 4.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 361 CVCNSYYKHRSVSDNQCIPAKEC 293
CVCN Y + DN+C+ EC
Sbjct: 283 CVCNDGYILPTGRDNKCVDKNEC 305
>SB_56223| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1719
Score = 27.1 bits (57), Expect = 5.9
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 120 THSVVVSKMILVAHATGFGFATVVAHYIRIVHIVAV 227
TH++ V+ + V HA A V H + + H ++V
Sbjct: 1510 THALSVTHALSVTHALSVAHALSVTHSLSVTHALSV 1545
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +3
Query: 120 THSVVVSKMILVAHATGFGFATVVAHYIRIVHIVAV 227
TH++ V+ + VAHA + V H + + H++++
Sbjct: 1516 THALSVTHALSVAHALSVTHSLSVTHALSVTHVLSL 1551
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 120 THSVVVSKMILVAHATGFGFATVVAHYIRIVHIVAV 227
TH++ V+ + V HA A V H + + H ++V
Sbjct: 1492 THALSVTHALSVTHALSLTHALSVTHALSVTHALSV 1527
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 120 THSVVVSKMILVAHATGFGFATVVAHYIRIVHIVAV 227
TH++ V+ + V HA F A V + + H ++V
Sbjct: 1552 THALSVTHALSVTHALSFAHALSVTQSLSVTHALSV 1587
>SB_35607| Best HMM Match : Activin_recp (HMM E-Value=1.4)
Length = 320
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/40 (32%), Positives = 14/40 (35%)
Frame = +1
Query: 157 HTQRGSALQLSSHTTFGLSTSLQFSYRHVDGQDPRLHSVW 276
HT RG + HTT G DG LH W
Sbjct: 155 HTTRGDGMPSDLHTTRGDGMKSDLHTTRGDGMPSDLHMTW 194
>SB_48169| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 27.1 bits (57), Expect = 5.9
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +1
Query: 103 HSSAGTHTPSLFLK*FSSHTQRGSALQLSSHTTFGLSTSLQFSYRHVDGQDPRLHS 270
H +A THTP+ + SHTQ+G Q +HT G S + + + P +S
Sbjct: 158 HPTA-THTPNGY-----SHTQQGLTRQTGTHTPNGYSHAQRVLTHQTGTRTPNAYS 207
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -3
Query: 164 CVCDENHFRNNDGVCVPAEECPSYVINTEH*WKTNGICKN 45
C C E + R++ G C EC + +H N +C N
Sbjct: 484 CQCAEGYERDSQGKCADVNECKT----GKHDCSVNALCTN 519
>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3474
Score = 26.6 bits (56), Expect = 7.8
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -3
Query: 167 RCVCDENHFRNNDGVCVPAEEC 102
+C C E + +DG CV EC
Sbjct: 294 QCTCFEGYHLTSDGQCVDINEC 315
>SB_48384| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1678
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = -3
Query: 167 RCVCDENHFRNNDGVCVPAEECPS--YVINTEH*WKTNGICKN 45
+C C + N+ VCV EC YV + N IC+N
Sbjct: 810 KCSCKRGYAHNDSNVCVDVNECTETPYVCS-----GNNSICEN 847
>SB_15476| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 274
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +3
Query: 120 THSVVVSKMILVAHATGFGFATVVAHYIRIVHIVAVLV*ARRW 248
TH++ V+ + V HA A V H + + H ++V + W
Sbjct: 127 THALSVTHALSVTHALSVTHALSVTHALSVTHALSVAHALKVW 169
>SB_786| Best HMM Match : EGF (HMM E-Value=0)
Length = 1427
Score = 26.6 bits (56), Expect = 7.8
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -1
Query: 385 IPNPCLSGCVCNS 347
+PNPCL+G +C S
Sbjct: 275 VPNPCLNGGICKS 287
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,564,272
Number of Sequences: 59808
Number of extensions: 301881
Number of successful extensions: 1162
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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