Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0393.Seq
(409 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical p... 39 0.001
Z98877-15|CAB63407.3| 572|Caenorhabditis elegans Hypothetical p... 39 0.001
Z98877-6|CAD56617.1| 432|Caenorhabditis elegans Hypothetical pr... 37 0.005
Z98877-5|CAD56616.1| 731|Caenorhabditis elegans Hypothetical pr... 37 0.005
Z98877-4|CAB54473.2| 796|Caenorhabditis elegans Hypothetical pr... 37 0.005
Z98877-3|CAB54472.2| 537|Caenorhabditis elegans Hypothetical pr... 37 0.005
U29377-10|AAA68717.1| 140|Caenorhabditis elegans Hypothetical p... 36 0.015
Z74031-3|CAA98455.1| 245|Caenorhabditis elegans Hypothetical pr... 33 0.10
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 32 0.18
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 30 0.74
Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical pr... 30 0.74
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 29 0.98
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 29 0.98
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 29 1.3
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 29 1.3
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 29 1.3
Z81532-5|CAE17816.1| 101|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z81117-4|CAB03319.1| 249|Caenorhabditis elegans Hypothetical pr... 28 2.3
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 28 2.3
U42830-3|AAC48275.1| 195|Caenorhabditis elegans Hypothetical pr... 28 3.0
Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical pr... 27 3.9
U39644-2|AAA80360.2| 966|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z82085-8|CAB04990.1| 270|Caenorhabditis elegans Hypothetical pr... 26 9.1
Z73426-3|CAA97795.2| 350|Caenorhabditis elegans Hypothetical pr... 26 9.1
Z68219-3|CAA92480.2| 747|Caenorhabditis elegans Hypothetical pr... 26 9.1
U58750-13|AAB00653.1| 616|Caenorhabditis elegans Hypothetical p... 26 9.1
U58738-3|AAQ81272.1| 349|Caenorhabditis elegans Apex-related ge... 26 9.1
U58738-2|AAQ81271.1| 357|Caenorhabditis elegans Apex-related ge... 26 9.1
U49956-4|AAK77620.1| 1117|Caenorhabditis elegans Variable abnorm... 26 9.1
U49956-3|AAK77621.1| 1122|Caenorhabditis elegans Variable abnorm... 26 9.1
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 26 9.1
AF040269-1|AAC38970.1| 1122|Caenorhabditis elegans Eph receptor ... 26 9.1
>Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical
protein Y69H2.10b protein.
Length = 975
Score = 39.1 bits (87), Expect = 0.001
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = -1
Query: 403 GEVICDIPNPCLSGCVCNSYYKHRSVSDNQCIPAKEC-PPVKCTRPNEVWDLVH 245
G P CL GC C YK R QC+ +++C KC+ NE W H
Sbjct: 479 GTATTKAPAKCLPGCTCRPAYK-RDSDSGQCVHSRQCFGTTKCS-DNEAWSKCH 530
Score = 31.9 bits (69), Expect = 0.18
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 379 NPCLSGCVCNSYYKHRSVSDNQCIPAKECPPVKCTRPNE 263
N C GC C Y + SD +C K+CPP +C + E
Sbjct: 769 NRCGQGCACA--YGYLRSSDGECYKPKDCPP-ECGQNEE 804
Score = 30.7 bits (66), Expect = 0.42
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -1
Query: 391 CDIPNPCLSGCVCNSYYKHRSVSDNQCIPAKECPPVKCTRPNEVW 257
C+ + C GC C S YK S D C+ ++C +E W
Sbjct: 885 CEAGSACTPGCFCRSNYKLDSNGD--CVHKRKCSETTKCPGSEKW 927
Score = 29.1 bits (62), Expect = 1.3
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = -3
Query: 164 CVCDENHFRNNDGVCVPAEECPSYVINTE--H*WKTNGICKN 45
C C + R++DG C ++CP E K G CKN
Sbjct: 775 CACAYGYLRSSDGECYKPKDCPPECGQNEEYRCEKCAGTCKN 816
>Z98877-15|CAB63407.3| 572|Caenorhabditis elegans Hypothetical
protein Y69H2.10a protein.
Length = 572
Score = 39.1 bits (87), Expect = 0.001
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = -1
Query: 403 GEVICDIPNPCLSGCVCNSYYKHRSVSDNQCIPAKEC-PPVKCTRPNEVWDLVH 245
G P CL GC C YK R QC+ +++C KC+ NE W H
Sbjct: 479 GTATTKAPAKCLPGCTCRPAYK-RDSDSGQCVHSRQCFGTTKCS-DNEAWSKCH 530
>Z98877-6|CAD56617.1| 432|Caenorhabditis elegans Hypothetical
protein Y69H2.3d protein.
Length = 432
Score = 37.1 bits (82), Expect = 0.005
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Frame = -1
Query: 409 TRGEVICDIPNP------CLSGCVCNSYYKHRSVSDNQCIPAKEC 293
T E C +P P C+ GC CNS + R+ SDN+C+ K+C
Sbjct: 37 TACEPTCGLPTPTFCTLQCVMGCQCNSGFFRRT-SDNRCVEQKDC 80
Score = 33.1 bits (72), Expect = 0.079
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 164 CVCDENHFRNNDGVCVPAEECPS 96
C C + RNN GVCV ECP+
Sbjct: 135 CSCMDGFVRNNQGVCVKEAECPA 157
Score = 32.3 bits (70), Expect = 0.14
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 164 CVCDENHFRNNDGVCVPAEEC 102
CVC E FR+N G CV +C
Sbjct: 404 CVCQEGFFRDNSGKCVTQNDC 424
>Z98877-5|CAD56616.1| 731|Caenorhabditis elegans Hypothetical
protein Y69H2.3c protein.
Length = 731
Score = 37.1 bits (82), Expect = 0.005
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Frame = -1
Query: 409 TRGEVICDIPNP------CLSGCVCNSYYKHRSVSDNQCIPAKEC 293
T E C +P P C+ GC CNS + R+ SDN+C+ K+C
Sbjct: 37 TACEPTCGLPTPTFCTLQCVMGCQCNSGFFRRT-SDNRCVEQKDC 80
Score = 33.1 bits (72), Expect = 0.079
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 164 CVCDENHFRNNDGVCVPAEECPS 96
C C + RNN GVCV ECP+
Sbjct: 135 CSCMDGFVRNNQGVCVKEAECPA 157
Score = 31.9 bits (69), Expect = 0.18
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = -1
Query: 373 CLSGCVCNSYYKHRSVSDNQCIPAKECPPVKCTRPNE 263
C GC C S Y RS SD +C K+CPP +C + E
Sbjct: 524 CGQGCACASGYL-RS-SDGECYKPKDCPP-ECGQNEE 557
Score = 31.5 bits (68), Expect = 0.24
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 164 CVCDENHFRNNDGVCVPAEEC 102
CVC + RNN+G CV +++C
Sbjct: 711 CVCADGFARNNNGTCVASDKC 731
Score = 29.9 bits (64), Expect = 0.74
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = -3
Query: 164 CVCDENHFRNNDGVCVPAEECPSYVINTE--H*WKTNGICKN 45
C C + R++DG C ++CP E K G CKN
Sbjct: 528 CACASGYLRSSDGECYKPKDCPPECGQNEEYRCEKCAGTCKN 569
Score = 29.5 bits (63), Expect = 0.98
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 179 KAEPRCVCDENHFRNNDGVCVPAEECPS 96
K + C C + RN G CV ECP+
Sbjct: 194 KCDIGCSCKKGFLRNRQGQCVNPTECPA 221
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Frame = -1
Query: 373 CLSGCVCNSYYKHRS----VSDNQCIPAKECP 290
C GCVC YK S V + C ECP
Sbjct: 647 CTPGCVCRPNYKLDSNGDCVHNRHCFKTTECP 678
>Z98877-4|CAB54473.2| 796|Caenorhabditis elegans Hypothetical
protein Y69H2.3b protein.
Length = 796
Score = 37.1 bits (82), Expect = 0.005
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Frame = -1
Query: 409 TRGEVICDIPNP------CLSGCVCNSYYKHRSVSDNQCIPAKEC 293
T E C +P P C+ GC CNS + R+ SDN+C+ K+C
Sbjct: 37 TACEPTCGLPTPTFCTLQCVMGCQCNSGFFRRT-SDNRCVEQKDC 80
Score = 33.1 bits (72), Expect = 0.079
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 164 CVCDENHFRNNDGVCVPAEECPS 96
C C + RNN GVCV ECP+
Sbjct: 135 CSCMDGFVRNNQGVCVKEAECPA 157
Score = 31.9 bits (69), Expect = 0.18
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = -1
Query: 373 CLSGCVCNSYYKHRSVSDNQCIPAKECPPVKCTRPNE 263
C GC C S Y RS SD +C K+CPP +C + E
Sbjct: 589 CGQGCACASGYL-RS-SDGECYKPKDCPP-ECGQNEE 622
Score = 31.5 bits (68), Expect = 0.24
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 164 CVCDENHFRNNDGVCVPAEEC 102
CVC + RNN+G CV +++C
Sbjct: 776 CVCADGFARNNNGTCVASDKC 796
Score = 29.9 bits (64), Expect = 0.74
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = -3
Query: 164 CVCDENHFRNNDGVCVPAEECPSYVINTE--H*WKTNGICKN 45
C C + R++DG C ++CP E K G CKN
Sbjct: 593 CACASGYLRSSDGECYKPKDCPPECGQNEEYRCEKCAGTCKN 634
Score = 29.5 bits (63), Expect = 0.98
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 179 KAEPRCVCDENHFRNNDGVCVPAEECPS 96
K + C C + RN G CV ECP+
Sbjct: 194 KCDIGCSCKKGFLRNRQGQCVNPTECPA 221
Score = 29.5 bits (63), Expect = 0.98
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 179 KAEPRCVCDENHFRNNDGVCVPAEECP 99
+ E C C + RN G CV ECP
Sbjct: 259 RCEKACSCKKGLVRNRQGQCVKLAECP 285
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Frame = -1
Query: 373 CLSGCVCNSYYKHRS----VSDNQCIPAKECP 290
C GCVC YK S V + C ECP
Sbjct: 712 CTPGCVCRPNYKLDSNGDCVHNRHCFKTTECP 743
>Z98877-3|CAB54472.2| 537|Caenorhabditis elegans Hypothetical
protein Y69H2.3a protein.
Length = 537
Score = 37.1 bits (82), Expect = 0.005
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Frame = -1
Query: 409 TRGEVICDIPNP------CLSGCVCNSYYKHRSVSDNQCIPAKEC 293
T E C +P P C+ GC CNS + R+ SDN+C+ K+C
Sbjct: 37 TACEPTCGLPTPTFCTLQCVMGCQCNSGFFRRT-SDNRCVEQKDC 80
Score = 33.1 bits (72), Expect = 0.079
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 164 CVCDENHFRNNDGVCVPAEECPS 96
C C + RNN GVCV ECP+
Sbjct: 135 CSCMDGFVRNNQGVCVKEAECPA 157
Score = 32.3 bits (70), Expect = 0.14
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 164 CVCDENHFRNNDGVCVPAEEC 102
CVC E FR+N G CV +C
Sbjct: 509 CVCQEGFFRDNSGKCVTQNDC 529
Score = 29.5 bits (63), Expect = 0.98
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 179 KAEPRCVCDENHFRNNDGVCVPAEECPS 96
K + C C + RN G CV ECP+
Sbjct: 194 KCDIGCSCKKGFLRNRQGQCVNPTECPA 221
>U29377-10|AAA68717.1| 140|Caenorhabditis elegans Hypothetical
protein K05F1.10 protein.
Length = 140
Score = 35.5 bits (78), Expect = 0.015
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -3
Query: 170 PRCVCDENHFRNNDGVCVPAEECPS 96
PRCVC++ + R+ G+C+ CP+
Sbjct: 93 PRCVCNDGYVRSEKGICIRPSHCPN 117
>Z74031-3|CAA98455.1| 245|Caenorhabditis elegans Hypothetical
protein F32D8.3 protein.
Length = 245
Score = 32.7 bits (71), Expect = 0.10
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 179 KAEPRCVCDENHFRNNDGVCVPAEECP 99
K EP C C RN+ +CV EECP
Sbjct: 87 KCEPGCTCRNGFVRNSLKLCVLPEECP 113
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 31.9 bits (69), Expect = 0.18
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 173 EPRCVCDENHFRNNDGVCVPAE 108
E C C+EN FR G C+P++
Sbjct: 46 ESNCTCNENEFRCQSGACIPSK 67
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
protein T01D3.3b protein.
Length = 1011
Score = 29.9 bits (64), Expect = 0.74
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = -1
Query: 376 PCLSGCVCNS---YYKHRSVSDNQCIPAKECPPVKCTRPNE 263
PC +GC C + + + ++CI +ECPP + T E
Sbjct: 654 PCQTGCFCKNGLVFENSATWHTSKCIKIEECPPEEETTTEE 694
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = -1
Query: 373 CLSGCVCNSYY--KHRSVSDNQCIPAKEC 293
C SGCVC Y H + ++C+ EC
Sbjct: 594 CFSGCVCRQPYVLLHPNDPTSRCVLPAEC 622
>Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical
protein T01D3.3a protein.
Length = 802
Score = 29.9 bits (64), Expect = 0.74
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = -1
Query: 376 PCLSGCVCNS---YYKHRSVSDNQCIPAKECPPVKCTRPNE 263
PC +GC C + + + ++CI +ECPP + T E
Sbjct: 445 PCQTGCFCKNGLVFENSATWHTSKCIKIEECPPEEETTTEE 485
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = -1
Query: 373 CLSGCVCNSYY--KHRSVSDNQCIPAKEC 293
C SGCVC Y H + ++C+ EC
Sbjct: 385 CFSGCVCRQPYVLLHPNDPTSRCVLPAEC 413
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
protein F29D11.1 protein.
Length = 4753
Score = 29.5 bits (63), Expect = 0.98
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3
Query: 161 VCDENHFRNNDGVCVPAE 108
VC+EN FR NDG C+ E
Sbjct: 52 VCNENDFRCNDGKCIRTE 69
Score = 27.9 bits (59), Expect = 3.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 158 CDENHFRNNDGVCVPAEE 105
C E+ FR NDG C+P +
Sbjct: 3878 CSESEFRCNDGKCIPGSK 3895
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
receptor-related protein protein.
Length = 4753
Score = 29.5 bits (63), Expect = 0.98
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3
Query: 161 VCDENHFRNNDGVCVPAE 108
VC+EN FR NDG C+ E
Sbjct: 52 VCNENDFRCNDGKCIRTE 69
Score = 27.9 bits (59), Expect = 3.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 158 CDENHFRNNDGVCVPAEE 105
C E+ FR NDG C+P +
Sbjct: 3878 CSESEFRCNDGKCIPGSK 3895
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 173 EPRCVCDENHFRNNDGVCVPAEECPSYVINTEH 75
EP+C C N+ R++ G C EC +N H
Sbjct: 1510 EPKCSCPVNYQRDSSGSCSIINECLFTQLNDCH 1542
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 173 EPRCVCDENHFRNNDGVCVPAEECPSYVINTEH 75
EP+C C N+ R++ G C EC +N H
Sbjct: 2094 EPKCSCPVNYQRDSSGSCSIINECLFTQLNDCH 2126
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 173 EPRCVCDENHFRNNDGVCVPAEECPSYVINTEH 75
EP+C C N+ R++ G C EC +N H
Sbjct: 1510 EPKCSCPVNYQRDSSGSCSIINECLFTQLNDCH 1542
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 173 EPRCVCDENHFRNNDGVCVPAEECPSYVINTEH 75
EP+C C N+ R++ G C EC +N H
Sbjct: 2094 EPKCSCPVNYQRDSSGSCSIINECLFTQLNDCH 2126
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 173 EPRCVCDENHFRNNDGVCVPAEECPSYVINTEH 75
EP+C C N+ R++ G C EC +N H
Sbjct: 2094 EPKCSCPVNYQRDSSGSCSIINECLFTQLNDCH 2126
>Z81532-5|CAE17816.1| 101|Caenorhabditis elegans Hypothetical
protein F36F2.8 protein.
Length = 101
Score = 28.3 bits (60), Expect = 2.3
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -1
Query: 373 CLSGCVCNSYYKHRSVSDNQCIPAKECP-PVKCTRPN 266
CL+ VC+ Y +S DN+CI ++ CP KC N
Sbjct: 30 CLTNEVCHHGYC-QSFDDNRCITSQFCPRNFKCINGN 65
>Z81117-4|CAB03319.1| 249|Caenorhabditis elegans Hypothetical
protein T06E6.10 protein.
Length = 249
Score = 28.3 bits (60), Expect = 2.3
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -3
Query: 170 PRCVCDENHFRNNDGVCVPAEEC 102
P CVC FR+ CV EEC
Sbjct: 217 PGCVCLNGFFRDKHDKCVTQEEC 239
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 28.3 bits (60), Expect = 2.3
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 173 EPRCVCDENHFRNNDGVCVPAEECPSYV 90
E C CD++HF DG C P E S V
Sbjct: 1456 EGMCTCDDHHFA-EDGYCRPIEARSSKV 1482
>U42830-3|AAC48275.1| 195|Caenorhabditis elegans Hypothetical
protein C53B7.2 protein.
Length = 195
Score = 27.9 bits (59), Expect = 3.0
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = -3
Query: 170 PRCVCDENHFRNNDGVCVPAEEC 102
P C C H +N C+PA C
Sbjct: 60 PSCTCLPGHVYSNSRQCIPANSC 82
Score = 27.5 bits (58), Expect = 3.9
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Frame = -1
Query: 391 CDIPNP-CLSGCV---CNSYYKHRSVSDNQCIPAKEC 293
C+ PNP C C C H + QCIPA C
Sbjct: 46 CESPNPQCRVDCTRPSCTCLPGHVYSNSRQCIPANSC 82
>Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical
protein C09F9.2 protein.
Length = 1642
Score = 27.5 bits (58), Expect = 3.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 173 EPRCVCDENHFRNNDGVCVPAEECP 99
+P C C +N+ R+N G C+ +CP
Sbjct: 425 KPGCTCADNYVRHN-GKCIYWGDCP 448
>U39644-2|AAA80360.2| 966|Caenorhabditis elegans Hypothetical
protein T10E10.4 protein.
Length = 966
Score = 27.5 bits (58), Expect = 3.9
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -3
Query: 134 NDGVCVPAEECPSYVINTEH*WKTNGICKNC 42
N+G C P CP+ + +++ + +G C NC
Sbjct: 534 NNGACCPLPTCPNNIASSQ---RCSGGCTNC 561
>Z82085-8|CAB04990.1| 270|Caenorhabditis elegans Hypothetical
protein ZK218.11 protein.
Length = 270
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Frame = -3
Query: 158 CDENHFRNNDGVCVPAEECPSYVINTEH*---WKTNGICKN 45
C GV VP C +Y ++ W NG CKN
Sbjct: 211 CPSTTTPRTGGVTVPGGTCTTYNADSSRTCAAWAANGFCKN 251
>Z73426-3|CAA97795.2| 350|Caenorhabditis elegans Hypothetical
protein F40F11.4 protein.
Length = 350
Score = 26.2 bits (55), Expect = 9.1
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Frame = -3
Query: 167 RCVCDENHFRNNDGVCVPAE-ECPSY 93
+CVC +FRN C P + P Y
Sbjct: 313 KCVCQLGYFRNGSNSCAPLKFSAPVY 338
>Z68219-3|CAA92480.2| 747|Caenorhabditis elegans Hypothetical
protein T05A1.3 protein.
Length = 747
Score = 26.2 bits (55), Expect = 9.1
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = -1
Query: 409 TRGEVICDIPNPCLSGCVCNSYYKHRSVSDNQCIPAKECPPV-KCTRPNEV 260
+R +++C N C + C C +C ECPP KC R +V
Sbjct: 365 SRNQLLCKYSNMCEADCEC--------CQKKECECRFECPPTCKCLRSADV 407
>U58750-13|AAB00653.1| 616|Caenorhabditis elegans Hypothetical
protein F55G1.13 protein.
Length = 616
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = -1
Query: 367 SGCVCNSYYKHRSVSDNQCIPAKECPPVKCTRPNEVWDLVH 245
S C C+ + SD C C P CT N+ ++V+
Sbjct: 41 SECTCSD--ESTQTSDTTCTAPTSCSPNPCTLSNQQCNMVN 79
>U58738-3|AAQ81272.1| 349|Caenorhabditis elegans Apex-related genes
protein 1, isoformb protein.
Length = 349
Score = 26.2 bits (55), Expect = 9.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 391 CDIPNPCLSGCVCNSYYKHRSVSD 320
C NPC +G VC++ YK + S+
Sbjct: 191 CSHQNPCANGGVCSTDYKCQCPSE 214
>U58738-2|AAQ81271.1| 357|Caenorhabditis elegans Apex-related genes
protein 1, isoforma protein.
Length = 357
Score = 26.2 bits (55), Expect = 9.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 391 CDIPNPCLSGCVCNSYYKHRSVSD 320
C NPC +G VC++ YK + S+
Sbjct: 178 CSHQNPCANGGVCSTDYKCQCPSE 201
>U49956-4|AAK77620.1| 1117|Caenorhabditis elegans Variable abnormal
morphology protein1, isoform a protein.
Length = 1117
Score = 26.2 bits (55), Expect = 9.1
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -3
Query: 179 KAEPRCVCDENHFRNNDGVCVPAEECPSYVINTEH*WKTNGICKNC 42
K CVCD + + D E CP+ NT + K +CK+C
Sbjct: 266 KTSGECVCDSGYSQIADSNGARCESCPT---NT-YKPKGQSLCKSC 307
>U49956-3|AAK77621.1| 1122|Caenorhabditis elegans Variable abnormal
morphology protein1, isoform b protein.
Length = 1122
Score = 26.2 bits (55), Expect = 9.1
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -3
Query: 179 KAEPRCVCDENHFRNNDGVCVPAEECPSYVINTEH*WKTNGICKNC 42
K CVCD + + D E CP+ NT + K +CK+C
Sbjct: 266 KTSGECVCDSGYSQIADSNGARCESCPT---NT-YKPKGQSLCKSC 307
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -1
Query: 193 ATTVAKPNPVACATRIILETTTECVC-QLKNVLPTSS 86
+T + + VA T + TTTEC+C + N TS+
Sbjct: 851 STPAPQSSTVASTTTVSPYTTTECICTTVSNTFGTST 887
>AF040269-1|AAC38970.1| 1122|Caenorhabditis elegans Eph receptor
tyrosine kinase protein.
Length = 1122
Score = 26.2 bits (55), Expect = 9.1
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -3
Query: 179 KAEPRCVCDENHFRNNDGVCVPAEECPSYVINTEH*WKTNGICKNC 42
K CVCD + + D E CP+ NT + K +CK+C
Sbjct: 266 KTSGECVCDSGYSQIADSNGARCESCPT---NT-YKPKGQSLCKSC 307
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,807,436
Number of Sequences: 27780
Number of extensions: 213918
Number of successful extensions: 797
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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