Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0393.Seq
         (409 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    30   0.009
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    30   0.009
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   2.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   4.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    20   9.4  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 30.3 bits (65), Expect = 0.009
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 170 PRCVCDENHFRNNDGVCVPAEEC 102
           P CVC   + RN   VCVP  +C
Sbjct: 69  PGCVCRLGYLRNKKKVCVPRSKC 91


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 30.3 bits (65), Expect = 0.009
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 170 PRCVCDENHFRNNDGVCVPAEEC 102
           P CVC   + RN   VCVP  +C
Sbjct: 69  PGCVCRLGYLRNKKKVCVPRSKC 91


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -1

Query: 340  KHRSVSDNQCIPAKECPP 287
            +H     N C P + CPP
Sbjct: 1686 RHMYEELNHCAPNRRCPP 1703


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 315 NVSPPKSVHRSSAP 274
           +V+PP   H SSAP
Sbjct: 512 HVAPPSGHHASSAP 525


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 309 SPPKSVHRSSAPDRMKSG 256
           SPP   HRSS+     SG
Sbjct: 277 SPPVKQHRSSSASTTCSG 294


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,745
Number of Sequences: 438
Number of extensions: 2669
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)