Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0393.Seq
         (409 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55460.1 68418.m06908 protease inhibitor/seed storage/lipid t...    27   3.7  
At4g31410.2 68417.m04457 expressed protein                             27   3.7  
At4g31410.1 68417.m04456 expressed protein                             27   3.7  
At1g63700.1 68414.m07209 protein kinase, putative contains prote...    27   3.7  
At5g13950.1 68418.m01631 expressed protein                             27   4.8  
At3g18270.1 68416.m02324 mandelate racemase/muconate lactonizing...    27   4.8  
At5g59020.1 68418.m07393 expressed protein                             27   6.4  
At3g27230.1 68416.m03404 expressed protein                             26   8.5  
At2g35060.1 68415.m04301 potassium transporter family protein si...    26   8.5  
At1g51940.1 68414.m05855 protein kinase family protein / peptido...    26   8.5  
At1g31120.1 68414.m03808 potassium transporter family protein si...    26   8.5  

>At5g55460.1 68418.m06908 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein contains Pfam
           profile: PF00234 protease inhibitor/seed storage/LTP
           family
          Length = 109

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = -1

Query: 175 PNPVACATRIILETTTECVCQLKNVLPTSSI 83
           P+P+     ++     +C+C+ K+VLP  ++
Sbjct: 53  PSPIKECCELLQAANLKCICRFKSVLPVLAV 83


>At4g31410.2 68417.m04457 expressed protein
          Length = 308

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +2

Query: 164 NGVRLCNCRRT-LHSDCPHRCSSRIGTSMDKIPDFIRSGALD 286
           NG R   C    LHS+C  R  S  GT     PD  RS  L+
Sbjct: 54  NGCRAFVCNTDHLHSNCLDRFISACGTESPPAPDEPRSKVLE 95


>At4g31410.1 68417.m04456 expressed protein
          Length = 308

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +2

Query: 164 NGVRLCNCRRT-LHSDCPHRCSSRIGTSMDKIPDFIRSGALD 286
           NG R   C    LHS+C  R  S  GT     PD  RS  L+
Sbjct: 54  NGCRAFVCNTDHLHSNCLDRFISACGTESPPAPDEPRSKVLE 95


>At1g63700.1 68414.m07209 protein kinase, putative contains protein
           kinase domain, Pfam:PF00069; similar to MEK kinase
           (MAP3Ka) [Arabidopsis thaliana] gi|4204912|gb|AAD10848
          Length = 883

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 309 SPPKSVHRSSAPDRMKSGILSIDVPIRELQRCGQSECS 196
           SP +S  RS  PD++ +  L I  P  ++   G  +CS
Sbjct: 238 SPSRSPMRSFIPDQVSNHGLLISKPYSDVSLLGSGQCS 275


>At5g13950.1 68418.m01631 expressed protein 
          Length = 939

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -1

Query: 109 KNVLPTSSILNTDGRR-MAFVKI 44
           KNVLP  SI  TDG + M+++KI
Sbjct: 293 KNVLPKDSIQQTDGAKYMSYLKI 315


>At3g18270.1 68416.m02324 mandelate racemase/muconate lactonizing
           enzyme family protein low similarity to cis,cis-muconate
           lactonizing enzyme [Burkholderia sp. TH2] GI:23491535;
           contains Pfam profile: PF01188 Mandelate
           racemase/muconate lactonizing enzyme, C-terminal domain,
           PF02746: Mandelate racemase/muconate lactonizing enzyme,
           N-terminal domain
          Length = 410

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +2

Query: 224 SSRIGTSMDKIPDFIRSGALDRWTLFGG-DTLIVTDASVLIVGVTNTS 364
           S R G  M  I    +S  +  W LFGG  + I TD ++ IV     S
Sbjct: 144 SVRAGMEMAMIDAAAKSVRVPLWKLFGGASSTITTDITIPIVSPAEAS 191


>At5g59020.1 68418.m07393 expressed protein
          Length = 780

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
 Frame = -1

Query: 340 KHRSVSDNQCIP---AKECPPVKCTR 272
           KHRS   +  +P    KEC  +KCTR
Sbjct: 99  KHRSSRQSSVMPNSVVKECEEIKCTR 124


>At3g27230.1 68416.m03404 expressed protein
          Length = 410

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 124 TPSLF-LK*FSSHTQRGSALQLSSHTTFGLSTSLQFSYRHVDGQDPRL 264
           T +LF L  FSSH+Q  S L  SS+    +S  L    R +D    +L
Sbjct: 35  TTNLFALYAFSSHSQANSPLLHSSNNISLVSQHLSLILREIDSSQRKL 82


>At2g35060.1 68415.m04301 potassium transporter family protein
           similar to HAK2 [Hordeum vulgare] GI:7108599, potassium
           transporter HAK2p [Mesembryanthemum crystallinum]
           gi|14091471|gb|AAK53759; KUP/HAK/KT Transporter family
           member, PMID:11500563; contains Pfam profile PF02705: K+
           potassium transporter
          Length = 792

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 263 FIRSGALDRWTLFGGDTLIVTDASVLIVGVTN 358
           + + G  DRWT  GG  L +T    L   +++
Sbjct: 291 YFKRGGRDRWTSLGGIMLSITGIEALFADLSH 322


>At1g51940.1 68414.m05855 protein kinase family protein /
           peptidoglycan-binding LysM domain-containing protein
           contains protein kinases ATP-binding region signature,
           PROSITE:PS00107
          Length = 651

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 206 DCPHRCSSRIGTSMDKIPDFIRSGALDRWTLFGGDTLIVTDASV 337
           D     SSR G SMD+I D   +G L+   +  GD L +   SV
Sbjct: 150 DSVQSLSSRFGVSMDRIEDV--NGILNLDNITAGDLLYIPLDSV 191


>At1g31120.1 68414.m03808 potassium transporter family protein
           similar to HAK2 [Hordeum vulgare] GI:7108599, potassium
           transporter [Arabidopsis thaliana]
           gi|2654088|gb|AAB87687; KUP/HAK/KT Transporter family
           member, PMID:11500563; contains Pfam profile PF02705: K+
           potassium transporter
          Length = 796

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 263 FIRSGALDRWTLFGGDTLIVTDASVLIVGVTN 358
           + + G  DRWT  GG  L +T    L   +++
Sbjct: 290 YFKRGGQDRWTSLGGIMLSITGIEALFADLSH 321


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,124,607
Number of Sequences: 28952
Number of extensions: 194731
Number of successful extensions: 490
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)