Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0392.Seq
(406 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 31 0.090
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 30 0.12
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 30 0.16
SPAC664.08c |||traub transciption factor family protein |Schizos... 29 0.21
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 29 0.27
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.36
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 29 0.36
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 28 0.48
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 28 0.48
SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyc... 28 0.63
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 27 1.1
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 1.5
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 25 3.4
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 4.5
SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces pombe... 25 4.5
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 25 4.5
SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|... 25 4.5
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 25 4.5
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe... 25 4.5
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|... 25 4.5
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 24 7.8
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 24 7.8
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 24 7.8
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 24 7.8
SPBC776.06c |||spindle pole body interacting protein |Schizosacc... 24 7.8
SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces pomb... 24 7.8
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 30.7 bits (66), Expect = 0.090
Identities = 23/92 (25%), Positives = 41/92 (44%)
Frame = -1
Query: 403 ESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDASADYQTXSRRLKRILPEI 224
E S + + G +RK K E+ S S++ + D++ D Q+ ++
Sbjct: 11 EDSIEKKSKNVASHGEKRKVKRKKEDLSMDGSNDGVKDSPDSNDDSQSKKKK-------- 62
Query: 223 KRKRKKLTQEILTERTKLLSAKKNNLLE*IKV 128
K+K KK Q + E L +NNL + +K+
Sbjct: 63 KKKLKKSQQPLNEENYPRLQTTENNLQKPLKI 94
>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 707
Score = 30.3 bits (65), Expect = 0.12
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = -1
Query: 385 DKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDASADYQTXSRRLKRILPEIKRKRKK 206
D S ++GS RK E ++ ++S S + D YQ LK PE + ++
Sbjct: 83 DSANSNDAGSSRKRKNLPNENTQDSTSESSEEEEDGLESYQKQLEGLKEKDPEFYKFLEQ 142
Query: 205 LTQEIL 188
Q++L
Sbjct: 143 NDQDLL 148
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 29.9 bits (64), Expect = 0.16
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -3
Query: 254 KKVEKNSARDKKEKEKTDTRNSDGTYKTSEREKEQSSR 141
KK+EK + + KKE +K D +S K+ +KE+ +
Sbjct: 190 KKLEKITKKKKKEHKKKDKESSSKKRKSGSSDKEEKKK 227
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 29.5 bits (63), Expect = 0.21
Identities = 22/83 (26%), Positives = 39/83 (46%)
Frame = -1
Query: 403 ESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDASADYQTXSRRLKRILPEI 224
E + D+N +V+ E SS + SE+N +D +SA + RLK+I+
Sbjct: 95 EEDSEEDENDAVSEDHENFSSSEASSISEENE-----DDDQSSAIPEKDMDRLKKIINGE 149
Query: 223 KRKRKKLTQEILTERTKLLSAKK 155
K+ ++ L + K L+ K+
Sbjct: 150 KKLSDQIRTSALEDMKKGLALKE 172
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 29.1 bits (62), Expect = 0.27
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Frame = -1
Query: 400 SSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSN---KSFNDGDASADYQTXSRRLKRILP 230
SS +RS S S++ YSE+NSSN GD + T L I P
Sbjct: 166 SSQQPPNDRSTLSSSQKAKRPLKRSYSEKNSSNAEPSGSRSGDRGTNVSTSGSLLDGIPP 225
Query: 229 EI 224
+I
Sbjct: 226 DI 227
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 28.7 bits (61), Expect = 0.36
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = -1
Query: 400 SSTYRDKNRSVNSGSERKSSGKDEEYSE-QNSSNKSFNDGDASADYQTXSRRLKRILPEI 224
SS+ ++ V +E K G E S+ ++SS+ S GD+ + + S E
Sbjct: 180 SSSESEEEEEVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSESESSSE--DEK 237
Query: 223 KRKRKKLTQEILTERTK 173
KRK + ++E + TK
Sbjct: 238 KRKAEPASEERPAKITK 254
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 28.7 bits (61), Expect = 0.36
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 310 SSNKSFNDGDASADYQTXSRRLKRILPEIKRKRKKLT 200
SSN ++D D + S+ + R IKRKRK L+
Sbjct: 230 SSNILYSDSDTERQSDSGSKNVARQFSRIKRKRKVLS 266
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 28.3 bits (60), Expect = 0.48
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = -1
Query: 346 SSGKDEEYSEQNSSNKSFNDGDASADYQTXSRR-----LKRILPEIKRKRKK 206
S+ ++EE + N S +S++ S+DYQ SRR + EIK KRKK
Sbjct: 161 SNEREEEVEDDNRSVESYS----SSDYQARSRRRFSEETTQRRAEIKEKRKK 208
>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 198
Score = 28.3 bits (60), Expect = 0.48
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -1
Query: 403 ESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDASADYQT 260
E S + + +++ K +S + SSN S ND DAS D T
Sbjct: 146 EESKLGESRDLIRRLKQKRFETKKNNFSVKESSNLSNNDSDASLDEDT 193
>SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 302
Score = 27.9 bits (59), Expect = 0.63
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 80 FGQICLTPRNPESCCPYFDS 139
FG IC T N ES C Y +S
Sbjct: 101 FGHICFTVDNIESACAYLES 120
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 27.1 bits (57), Expect = 1.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 275 G*LPNXIKKVEKNSARDKKEKEKTDTRNSD 186
G +PN I+K+EK + + KE+ + NSD
Sbjct: 1323 GHIPNSIRKLEKGLSTLSELKERLNASNSD 1352
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.6 bits (56), Expect = 1.5
Identities = 12/45 (26%), Positives = 29/45 (64%)
Frame = -3
Query: 266 PNXIKKVEKNSARDKKEKEKTDTRNSDGTYKTSEREKEQSSRVNQ 132
P +++++KN +KEK++ +T+ + T K ++ K+Q + +N+
Sbjct: 1351 PTQLEELKKNCEALEKEKQELETKLQE-TAKETDTFKQQVNSLNE 1394
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 25.4 bits (53), Expect = 3.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 14 EYVHFLKSARLCQSTFLFLY 73
+ V FLK +RL S+ LFLY
Sbjct: 835 QIVRFLKGSRLYASSLLFLY 854
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.0 bits (52), Expect = 4.5
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Frame = -1
Query: 337 KDEEYSEQNSSNKSFNDGDASADYQTXSR--RL-----KRILPEIKRKRKKLTQEILTER 179
K EE +Q K AD + +R RL KRIL E KR+ K +E R
Sbjct: 661 KREEKQKQKEREKKLKKQQQEADREKMAREQRLREEEEKRILEERKRREKLDKEEEERRR 720
Query: 178 TKLL---SAKKNNLLE*IKVRA 122
+LL S +K L K+ A
Sbjct: 721 RELLEKESEEKERRLREAKIAA 742
>SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 104
Score = 25.0 bits (52), Expect = 4.5
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = -1
Query: 289 DGDASADYQTXSRRLKRILPEIKRKRKKLTQEILTERTKLLSAKKNNLLE 140
D + A + R+++ + E RK++++ + ILT+R KK++ E
Sbjct: 48 DRNDKARLNRENARMRKKVIEENRKKEEIEERILTDRILQQERKKSHANE 97
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 25.0 bits (52), Expect = 4.5
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -3
Query: 269 LPNXIKKVEKNSARDKKEKEKTDTRNSDGTYKTSEREKEQSS 144
+P K +K R+KKE+EK + K S E +S
Sbjct: 172 IPEVRVKTKKEKEREKKEREKLRKKQQQAKKKGSTGEDTLAS 213
Score = 24.6 bits (51), Expect = 5.9
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -3
Query: 254 KKVEKNSARDKKEKEKTDTRNSDGTYKTSEREKEQSS 144
+K E + +KE++K + + G Y S+++KEQ +
Sbjct: 288 RKEEARLKKKEKERKKKEEMKAQGKY-LSKKQKEQQA 323
>SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 401
Score = 25.0 bits (52), Expect = 4.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 266 PNXIKKVEKNSARDKKEKEKTDTRNS 189
P +KK K +DKK +K T N+
Sbjct: 349 PKDLKKAMKQKKQDKKNAKKAGTTNA 374
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 25.0 bits (52), Expect = 4.5
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -3
Query: 254 KKVEKNSARDKKEKEKTDTRNSDGTYKTSEREKEQSSR 141
+K K +DKKEK+K ++ SE K+ +
Sbjct: 456 EKPSKKEKKDKKEKKKEKSKKKRSADDASEEVKKSKKK 493
>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 229
Score = 25.0 bits (52), Expect = 4.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 237 ILFNLLDXVW*SADASPSLKDLLL 308
+LFNLL+ VW P+ DL L
Sbjct: 157 LLFNLLESVWQFVRPQPTFDDLQL 180
>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 714
Score = 25.0 bits (52), Expect = 4.5
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = -3
Query: 245 EKNSARDKKEKEKTDTRNSDGTYKTSEREKEQSSRVNQ 132
+ A+ +K + ++NSD Y + +KE V+Q
Sbjct: 167 KSEKAKSEKSPFLSTSKNSDANYSKTTNQKEAEKAVSQ 204
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 24.2 bits (50), Expect = 7.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 385 DKNRSVNSGSERKSSGKDEEYSEQNSSNKS 296
D+ R+ +RK+ G+DEE E + KS
Sbjct: 830 DETRNAERKMQRKAYGEDEEDVETEAEAKS 859
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 24.2 bits (50), Expect = 7.8
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = -1
Query: 382 KNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGD 281
+ +SV + + G+D++ SEQ ++ + ++D D
Sbjct: 216 EQKSVLPNAVKNIDGQDDDSSEQTAAFEEYDDDD 249
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 24.2 bits (50), Expect = 7.8
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = -3
Query: 242 KNSARDKKEKEKTDTRNSDGTYKTSE-REKEQSSR 141
++S +DKK+K+K+ N D K + R+KE+ +R
Sbjct: 172 ESSEKDKKKKKKS-KENDDAPKKDRKTRKKEEKAR 205
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 24.2 bits (50), Expect = 7.8
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = -1
Query: 385 DKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDASADYQTXSRRLKRILPE--IKRKR 212
++ + V + +GK E + + +N + +D S DYQ + + + E I +K
Sbjct: 34 EREKEVLKNLQNSLTGKTAEENLNDEANHTSSDKSKSEDYQPSNVNVWALRKEKMIPKKH 93
Query: 211 KKLTQE 194
+ QE
Sbjct: 94 SHVKQE 99
Score = 24.2 bits (50), Expect = 7.8
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -1
Query: 388 RDKNRSVNSGSERKSSGKDE-EYSEQNSSNKSFN 290
R +RS N GS R +G+ YS S+ + N
Sbjct: 162 RKSSRSRNDGSRRNGNGRRRGNYSSHGSNKRQTN 195
>SPBC776.06c |||spindle pole body interacting protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 24.2 bits (50), Expect = 7.8
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 249 LLDXVW*SADASPSLKDL 302
LLD W D+SPSLK L
Sbjct: 122 LLDTAWEIFDSSPSLKTL 139
>SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 117
Score = 24.2 bits (50), Expect = 7.8
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 256 SRRLKRILPEIKRKRKKLTQEILTERTKLLSA 161
S R K I K R+ + Q ++ ERTK LSA
Sbjct: 4 SARSKSIRRNKKVLRENVFQPVIDERTKRLSA 35
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,311,883
Number of Sequences: 5004
Number of extensions: 23105
Number of successful extensions: 166
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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