Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0391.Seq
         (398 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O77089 Cluster: Inositol 1,4,5-trisphosphate receptor; ...    31   6.3  
UniRef50_A6DEZ5 Cluster: Type II secretion pathway protein XcpQ;...    31   8.3  

>UniRef50_O77089 Cluster: Inositol 1,4,5-trisphosphate receptor; n=2;
            Coelomata|Rep: Inositol 1,4,5-trisphosphate receptor -
            Panulirus argus (Spiny lobster)
          Length = 2783

 Score = 31.5 bits (68), Expect = 6.3
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = -3

Query: 360  LAGSRRVSFHNK---FWDHCPS*RYFWNYIYIHKXVSVRLITSITTRIRYIPSNIVTRYL 190
            + G  R SF NK   F DH       W+Y+Y +  V+V+  T  T    Y+   +  + L
Sbjct: 2636 ICGLTRSSFDNKAVNFEDHIKREHNMWHYLYFYVQVNVKDPTEFTGPESYVYLLVKEKDL 2695

Query: 189  NKLFPKV 169
            N  FP++
Sbjct: 2696 N-WFPRM 2701


>UniRef50_A6DEZ5 Cluster: Type II secretion pathway protein XcpQ;
           n=1; Caminibacter mediatlanticus TB-2|Rep: Type II
           secretion pathway protein XcpQ - Caminibacter
           mediatlanticus TB-2
          Length = 336

 Score = 31.1 bits (67), Expect = 8.3
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -3

Query: 252 LITSITTRIRYIPSNIVTRYLNKLFPKV*YE 160
           L+++   +  YIP N+++ YL K +P V ++
Sbjct: 36  LLSNFLIKFNYIPKNVISNYLKKNYPNVKFQ 66


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 334,838,789
Number of Sequences: 1657284
Number of extensions: 5055126
Number of successful extensions: 11272
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11271
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16926675320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)