Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0391.Seq
         (398 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   4.5  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    20   7.8  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    20   7.8  

>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 54  ERYEQITSSFSIYTRNIL 107
           E+YEQ  + F+ +  N+L
Sbjct: 163 EKYEQACNEFTTHVMNLL 180


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 296 YRQEGQWSQN 325
           YRQE QW+ +
Sbjct: 680 YRQEAQWTSS 689


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 380 NEAHGPVSPAAGVFRFIINFGTTALPDG 297
           N   GPV PAA      + +G+  L  G
Sbjct: 133 NSLTGPVRPAACTPDSRVGYGSVGLVGG 160


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,194
Number of Sequences: 336
Number of extensions: 1328
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)