Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0391.Seq
         (398 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    25   5.7  
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    24   7.6  

>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 3   YFCFKLYFEHVNIFSSSERYEQITSSFSIY 92
           Y CF  YF   ++ SS   Y+++  S  +Y
Sbjct: 19  YKCFVKYFPKCSVQSSFHSYDELAFSRRLY 48


>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 297 YFWNYIYIHKXVSVRLITSIT 235
           YFW  +Y+ +  S+R  T++T
Sbjct: 515 YFWRSVYLSELYSLRNRTNVT 535


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,418,280
Number of Sequences: 5004
Number of extensions: 22162
Number of successful extensions: 59
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)